| MirGeneDB ID | Ava-Mir-87-o34 |
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| Family name |
MIR-87 (all species) |
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| Seed |
UGAGCAA |
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| Species |
Bdelloid rotifer (Adineta vaga) |
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| MiRBase ID |
|
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| Paralogues |
Ava-Mir-87-o35
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| Orthologues |
Gsp-Mir-87
Sne-Mir-87
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| Node of Origin (locus) |
A. vaga
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| Node of Origin (family) |
Protostomia
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Genome context
(GCA_021613535.1_ASM2161353v1_AVA) |
CP075494.1: 5671659-5671722 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UCCGAUUGAUACUAUCUGCGUUGGUAAUGCACGCCUGAAAUUUUCCUCAAACCUUUGCUUUUAUGUGAAUAGGUGAGCAAAGUUUCAGGUGUAUUGAUCCAACACAUAUUCGUCAUAUUUCAAC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
UCCGAUUGAUACUAUCU--|C UAAUGC C AA UUGCUUU
G GUUGG ACGCCUGAAAUUUU CUC ACCU U
C CAACC UGUGGACUUUGAAA GAG UGGA A
CAACUUUAUACUGCUUAUA^A UAGUUA C -- UAAGUGU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Ava-Mir-87-o34_5p* |
| mirBase accession | None |
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| Sequence |
0- ACGCCUGAAAUUUUCCUCAAACCU -24
Get sequence
|
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| Mature sequence |
Ava-Mir-87-o34_3p |
| mirBase accession | None |
|---|
| Sequence |
42- GUGAGCAAAGUUUCAGGUGUAU -64
Get sequence
|
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