MirGeneDB ID | Ava-Mir-87-o35 |
Family name |
MIR-87 (all species) |
Seed |
UGAGCAA |
Species |
Bdelloid rotifer (Adineta vaga) |
MiRBase ID |
|
Paralogues |
Ava-Mir-87-o34
|
Orthologues |
Gsp-Mir-87
Sne-Mir-87
|
Node of Origin (locus) |
A. vaga
|
Node of Origin (family) |
Protostomia
|
Genome context (GCA_021613535.1_ASM2161353v1_AVA) |
CP075495.1: 14830059-14830122 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUCUAUCAUAUUAAUAAACGUUGGUAAUGCACGCCUGAAAUUUUUCUCAAACCUUUGAUCUUAUAUGAAUAGGUGAGCAAAGUUUCAGGUGUAUUGAUCCAACACAUUCUCUUCAGUUAUUGAA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UUCUAUCAUAUUAAUAAAC--| UAAUGC U AA UUGAUCU
GUUGG ACGCCUGAAAUUUU CUC ACCU U
CAACC UGUGGACUUUGAAA GAG UGGA A
AAGUUAUUGACUUCUCUUACA^ UAGUUA C -- UAAGUAU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Ava-Mir-87-o35_5p* |
mirBase accession | None |
Sequence |
0- ACGCCUGAAAUUUUUCUCAAACCU -24
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|
Mature sequence |
Ava-Mir-87-o35_3p |
mirBase accession | None |
Sequence |
42- GUGAGCAAAGUUUCAGGUGUAU -64
Get sequence
|