MirGeneDB 3.0

MirGeneDB ID

Ava-Mir-87-o35

Family name MIR-87 (all species)
Seed UGAGCAA
Species Bdelloid rotifer (Adineta vaga)
MiRBase ID
Paralogues Ava-Mir-87-o34 
Orthologues Gsp-Mir-87  Sne-Mir-87 
Node of Origin (locus) A. vaga
Node of Origin (family) Protostomia
Genome context
(GCA_021613535.1_ASM2161353v1_AVA)
CP075495.1: 14830059-14830122 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UUCUAUCAUAUUAAUAAACGUUGGUAAUGCACGCCUGAAAUUUUUCUCAAACCUUUGAUCUUAUAUGAAUAGGUGAGCAAAGUUUCAGGUGUAUUGAUCCAACACAUUCUCUUCAGUUAUUGAA
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Structure
        10          20        30        40        50        60  
UUCUAUCAUAUUAAUAAAC--|    UAAUGC              U   AA    UUGAUCU 
                     GUUGG      ACGCCUGAAAUUUU CUC  ACCU       U
                     CAACC      UGUGGACUUUGAAA GAG  UGGA       A
AAGUUAUUGACUUCUCUUACA^    UAGUUA              C   --    UAAGUAU 
  120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
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Star sequence

Ava-Mir-87-o35_5p*

mirBase accessionNone
Sequence
0- ACGCCUGAAAUUUUUCUCAAACCU -24
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Mature sequence

Ava-Mir-87-o35_3p

mirBase accessionNone
Sequence
42- GUGAGCAAAGUUUCAGGUGUAU -64
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