MirGeneDB 3.0

MirGeneDB ID

Bfl-Mir-12489-P2

Family name MIR-12489 (all species)
Seed AGUGGUC
Species Florida lancelet (Branchiostoma floridae)
MiRBase ID
Paralogues Bfl-Mir-12489-P1  Bfl-Mir-12489-P3 
Orthologues Bla-Mir-12489-P2 
Node of Origin (locus) Branchiostoma
Node of Origin (family) Branchiostoma
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)
NC_049990.1: 15554360-15554418 [-] UCSC
Precursor
(pre-Mir +30nt flank)
CAAGGAUCUGAUCUAGAGGACCGUAAGGACCAGUGGUCCCACCGUGGCUCGUGAACUCUGGAUACCGAGCCUACGGCUGGACCUCUAGUCAUUGGGUUCUCCUGUGCUACUAUUUAAAC
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Structure
        10           20        30        40         50        
CAAGGAUCUGAUCUAGA---|    G   G   C  U     CA    -      UGAACU 
                    GGACC UAA GAC AG GGUCC  CCGU GGCUCG      C
                    CUUGG GUU CUG UC CCAGG  GGCA CCGAGC      U
CAAAUUUAUCAUCGUGUCCU^    -   A   A  U     UC    U      CAUAGG 
       110       100         90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Bfl-Mir-12489-P2_5p (predicted)

mirBase accessionNone
Sequence
0- CAGUGGUCCCACCGUGGCUCG -21
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Co-mature sequence

Bfl-Mir-12489-P2_3p (predicted)

mirBase accessionNone
Sequence
37- AGCCUACGGCUGGACCUCUAGU -59
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