| MirGeneDB ID | Bfl-Mir-12489-P2 |
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| Family name |
MIR-12489 (all species) |
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| Seed |
AGUGGUC |
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| Species |
Florida lancelet (Branchiostoma floridae) |
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| MiRBase ID |
|
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| Paralogues |
Bfl-Mir-12489-P1
Bfl-Mir-12489-P3
|
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| Orthologues |
Bla-Mir-12489-P2
|
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| Node of Origin (locus) |
Branchiostoma
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| Node of Origin (family) |
Branchiostoma
|
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Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic) |
NC_049990.1: 15554360-15554418 [-]
UCSC
|
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Precursor
(pre-Mir +30nt flank) |
CAAGGAUCUGAUCUAGAGGACCGUAAGGACCAGUGGUCCCACCGUGGCUCGUGAACUCUGGAUACCGAGCCUACGGCUGGACCUCUAGUCAUUGGGUUCUCCUGUGCUACUAUUUAAAC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CAAGGAUCUGAUCUAGA---| G G C U CA - UGAACU
GGACC UAA GAC AG GGUCC CCGU GGCUCG C
CUUGG GUU CUG UC CCAGG GGCA CCGAGC U
CAAAUUUAUCAUCGUGUCCU^ - A A U UC U CAUAGG
110 100 90 80 70 60 |
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| Deep sequencing |
|
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| 3' NTU |
Unknown
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Bfl-Mir-12489-P2_5p (predicted) |
| mirBase accession | None |
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| Sequence |
0- CAGUGGUCCCACCGUGGCUCG -21
Get sequence
|
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| Co-mature sequence |
Bfl-Mir-12489-P2_3p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
37- AGCCUACGGCUGGACCUCUAGU -59
Get sequence
|
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