| MirGeneDB ID | Bla-Mir-12489-P2 |
|---|
| Family name |
MIR-12489 (all species) |
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| Seed |
AGUGGUC |
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| Species |
European lancelet (Branchiostoma lanceolatum) |
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| MiRBase ID |
|
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| Paralogues |
Bla-Mir-12489-P1a
Bla-Mir-12489-P1b
Bla-Mir-12489-P3
|
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| Orthologues |
Bfl-Mir-12489-P2
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| Node of Origin (locus) |
Branchiostoma
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| Node of Origin (family) |
Branchiostoma
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Genome context
(BraLan2) |
Sc0000011: 5371193-5371251 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CAAGGCUGUGAUAUAGAGGACCAUACUGACCAGUGGUCCCACCGUGGCUCGUGAACUCUGCAUACCGAGCUUUCGGCUGGACCUCUAGUCAUUGGGUUCUCCUGCGCUACCAAGAUCUA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CAAGGCUGUGAUAUAGA---| AUAC C U CA U- UGAACU
GGACC UGAC AG GGUCC CCG GGCUCG C
CUUGG ACUG UC CCAGG GGC UCGAGC U
AUCUAGAACCAUCGCGUCCU^ GUU- A U UC UU CAUACG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Bla-Mir-12489-P2_5p |
| mirBase accession | None |
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| Sequence |
0- CAGUGGUCCCACCGUGGCUCG -21
Get sequence
|
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| Co-mature sequence |
Bla-Mir-12489-P2_3p |
| mirBase accession | None |
|---|
| Sequence |
37- AGCUUUCGGCUGGACCUCUAGU -59
Get sequence
|
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