MirGeneDB 3.0

MirGeneDB ID

Bla-Mir-12489-P3

Family name MIR-12489 (all species)
Seed AGUGGUC
Species European lancelet (Branchiostoma lanceolatum)
MiRBase ID
Paralogues Bla-Mir-12489-P1a  Bla-Mir-12489-P1b  Bla-Mir-12489-P2 
Orthologues Bfl-Mir-12489-P3 
Node of Origin (locus) Branchiostoma
Node of Origin (family) Branchiostoma
Genome context
(BraLan2)
Sc0000011: 5371505-5371564 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AGACACCUGGGACCAUAUGGCACUGAGAGCUAGUGGUCGGUUGAGGUUCGCUGUAAGAUCCAACAAUGCGAAUCUCUGCCUCCCAUUUGCUUUCUCAUGCCACACUCAUCACAAAAAGCA
Get precursor sequence
Structure
        10         20         30        40        50         
AGACACCUGGGACCAUA-     CU-|     U     UC   U         UGUAAGA 
                  UGGCA   GAGAGC AGUGG  GGU GAGGUUCGC       U
                  ACCGU   CUUUCG UUACC  CCG CUCUAAGCG       C
ACGAAAAACACUACUCAC     ACU^     U     CU   U         UAACAAC 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Ad Em Em Em Em
Mature sequence

Bla-Mir-12489-P3_5p

mirBase accessionNone
Sequence
0- UAGUGGUCGGUUGAGGUUCGCU -22
Get sequence
Star sequence

Bla-Mir-12489-P3_3p*

mirBase accessionNone
Sequence
38- CGAAUCUCUGCCUCCCAUUUGC -60
Get sequence