| MirGeneDB ID | Bla-Mir-12489-P1a |
|---|
| Family name |
MIR-12489 (all species) |
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| Seed |
GAGCCUC |
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| Species |
European lancelet (Branchiostoma lanceolatum) |
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| MiRBase ID |
|
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| Paralogues |
Bla-Mir-12489-P1b
Bla-Mir-12489-P2
Bla-Mir-12489-P3
|
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| Orthologues |
Bfl-Mir-12489-P1
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| Node of Origin (locus) |
B. lanceolatum
|
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| Node of Origin (family) |
Branchiostoma
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Genome context
(BraLan2) |
Sc0000011: 5369635-5369693 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CCGGGAGUCCCUUUUCUCUGCCUCUGGGCUCAGUGGUCGGUUGAGACUCGCGUGUUUUGUGACAUCACGAGCCUCGACUCACCACUGCUCCCUGCGGUGGGCAGAACGACUGGAUCCAC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CCGGGAGUCCCUUUUCU--|UG UCU CU C A CGUGUUUU
C CC GGG CAGUGGU GGUUGAG CUCG \
G GG CCC GUCACCA UCAGCUC GAGC G
CACCUAGGUCAGCAAGACG^GU CGU UC C C ACUACAGU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
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| Star sequence |
Bla-Mir-12489-P1a_5p* |
| mirBase accession | None |
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| Sequence |
0- CAGUGGUCGGUUGAGACUCGCG -22
Get sequence
|
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| Mature sequence |
Bla-Mir-12489-P1a_3p |
| mirBase accession | None |
|---|
| Sequence |
37- CGAGCCUCGACUCACCACUGCU -59
Get sequence
|
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