MirGeneDB 3.0
MirGeneDB ID

Bfl-Mir-12489-P1

Family name MIR-12489 (all species)
Seed GAGCCUC
Species Florida lancelet (Branchiostoma floridae)
MiRBase ID
Paralogues Bfl-Mir-12489-P2  Bfl-Mir-12489-P3 
Orthologues Bla-Mir-12489-P1a  Bla-Mir-12489-P1b 
Node of Origin (locus) Branchiostoma
Node of Origin (family) Branchiostoma
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)		 NC_049990.1: 15555062-15555121 [-] UCSC
Precursor
(pre-Mir +30nt flank)
ACCGUCUAACAUUUUCCCUGCCUCUGGGCUCAGUGGUCGGUUGAGACUCGCGUGUUUUUGUGACAUCACGAGCCUCGACUAACCACUGCUCCCAGGGGUGGGCUGAACGACUGGACACCG
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Structure
        10          20        30        40        50         
ACCGUCUAACAUUUUCC--|UG        CU       CG      A    CGUGUUUU 
                   C  CCUCUGGG  CAGUGGU  GUUGAG CUCG        U
                   G  GGGGACCC  GUCACCA  CAGCUC GAGC        G
GCCACAGGUCAGCAAGUCG^GU        UC       AU      C    ACUACAGU 
.       110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Star sequence

Bfl-Mir-12489-P1_5p* (predicted)
mirBase accessionNone
Sequence 
0- CAGUGGUCGGUUGAGACUCGCG -22
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Mature sequence

Bfl-Mir-12489-P1_3p (predicted)
mirBase accessionNone
Sequence 
38- CGAGCCUCGACUAACCACUGCU -60
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