MirGeneDB 3.0
MirGeneDB ID

Bla-Mir-12489-P1b

Family name MIR-12489 (all species)
Seed GAGCCUC
Species European lancelet (Branchiostoma lanceolatum)
MiRBase ID
Paralogues Bla-Mir-12489-P1a  Bla-Mir-12489-P2  Bla-Mir-12489-P3 
Orthologues Bfl-Mir-12489-P1 
Node of Origin (locus) B. lanceolatum
Node of Origin (family) Branchiostoma
Genome context
(BraLan2)		 Sc0000011: 5370759-5370817 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CCGGGAGUCCCUUUUCUCUGCCUCUGGGCUCAGUGGUCGGUUGAGACUCGCGUGUUUUGUGACAUCACGAGCCUCGACUCACCACUGCUCCCUGCGGUGGGCAGAACGACUGGAUCCAC
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Structure
        10          20        30        40        50         
CCGGGAGUCCCUUUUCU--|UG  UCU   CU       C       A    CGUGUUUU 
                   C  CC   GGG  CAGUGGU GGUUGAG CUCG        \
                   G  GG   CCC  GUCACCA UCAGCUC GAGC        G
CACCUAGGUCAGCAAGACG^GU  CGU   UC       C       C    ACUACAGU 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
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Star sequence

Bla-Mir-12489-P1b_5p*
mirBase accessionNone
Sequence 
0- CAGUGGUCGGUUGAGACUCGCG -22
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Mature sequence

Bla-Mir-12489-P1b_3p
mirBase accessionNone
Sequence 
37- CGAGCCUCGACUCACCACUGCU -59
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