| MirGeneDB ID | Bfl-Mir-12489-P3 |
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| Family name |
MIR-12489 (all species) |
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| Seed |
AGUGGUC |
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| Species |
Florida lancelet (Branchiostoma floridae) |
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| MiRBase ID |
|
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| Paralogues |
Bfl-Mir-12489-P1
Bfl-Mir-12489-P2
|
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| Orthologues |
Bla-Mir-12489-P3
|
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| Node of Origin (locus) |
Branchiostoma
|
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| Node of Origin (family) |
Branchiostoma
|
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Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic) |
NC_049990.1: 15553768-15553827 [-]
UCSC
|
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Precursor
(pre-Mir +30nt flank) |
GCAACUGAAACCAGUAUGGCAUGUGAGAGCUAGUGGUCGGUUGAGGUUCGCUGUAAGAUCCUACAAGGCGAAUCUCUGUCGCCCAUUCGCUUUCUCGUGCCAGUUUCAACACAAACCAAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GCAACUGAAACCAGUAU--| U U U UU GUAAGA
GGCAUG GAGAGC AGUGG CGG GAGGUUCGCU U
CCGUGC CUUUCG UUACC GCU CUCUAAGCGG C
CAACCAAACACAACUUUGA^ U C C GU AACAUC
. 110 100 90 80 70 60 |
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| Deep sequencing |
|
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| 3' NTU |
Unknown
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Bfl-Mir-12489-P3_5p (predicted) |
| mirBase accession | None |
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| Sequence |
0- UAGUGGUCGGUUGAGGUUCGCU -22
Get sequence
|
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| Star sequence |
Bfl-Mir-12489-P3_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
38- CGAAUCUCUGUCGCCCAUUCGC -60
Get sequence
|
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