MirGeneDB 3.0

MirGeneDB ID

Bfl-Mir-12489-P3

Family name MIR-12489 (all species)
Seed AGUGGUC
Species Florida lancelet (Branchiostoma floridae)
MiRBase ID
Paralogues Bfl-Mir-12489-P1  Bfl-Mir-12489-P2 
Orthologues Bla-Mir-12489-P3 
Node of Origin (locus) Branchiostoma
Node of Origin (family) Branchiostoma
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)
NC_049990.1: 15553768-15553827 [-] UCSC
Precursor
(pre-Mir +30nt flank)
GCAACUGAAACCAGUAUGGCAUGUGAGAGCUAGUGGUCGGUUGAGGUUCGCUGUAAGAUCCUACAAGGCGAAUCUCUGUCGCCCAUUCGCUUUCUCGUGCCAGUUUCAACACAAACCAAC
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Structure
        10          20        30        40        50         
GCAACUGAAACCAGUAU--|     U      U     U   UU          GUAAGA 
                   GGCAUG GAGAGC AGUGG CGG  GAGGUUCGCU      U
                   CCGUGC CUUUCG UUACC GCU  CUCUAAGCGG      C
CAACCAAACACAACUUUGA^     U      C     C   GU          AACAUC 
.       110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Bfl-Mir-12489-P3_5p (predicted)

mirBase accessionNone
Sequence
0- UAGUGGUCGGUUGAGGUUCGCU -22
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Star sequence

Bfl-Mir-12489-P3_3p* (predicted)

mirBase accessionNone
Sequence
38- CGAAUCUCUGUCGCCCAUUCGC -60
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