MirGeneDB 3.0

MirGeneDB ID

Bfl-Mir-4868-P1

Family name MIR-4868 (all species)
Seed CAGCUCC
Species Florida lancelet (Branchiostoma floridae)
MiRBase ID bfl-mir-4868a
Paralogues Bfl-Mir-4868-P2 
Orthologues
Node of Origin (locus) Branchiostoma
Node of Origin (family) Branchiostoma
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)
NC_049981.1: 9953158-9953217 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-4868-P1)
Mir-22-P2b NC_049981.1: 9942475-9942534 [-] UCSC
Mir-4868-P2 NC_049981.1: 9942475-9942534 [-] UCSC
Mir-22-P2a NC_049981.1: 9953158-9953217 [-] UCSC
Mir-4868-P1 NC_049981.1: 9953158-9953217 [-] UCSC
Precursor
(pre-Mir +30nt flank)
AGAUUGAGAAAUGAUGUGGUCUUCUCGCCCCUGAUCAGCCCGGAAGCUGUUACGUCACUUCCGUUGUAUCAGCUCCAGCGCUGAUCAGUGACGCGGUGACUUAAAAACAACUACGCCAGG
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Structure
        10          20        30          40         50         
AGAUUGAGAAAUGAUGU--    UU U   CC--         CC-|  A    U  CGUCAC 
                   GGUC  C CGC    CUGAUCAGC   GGA GCUG UA      U
                   UCAG  G GCG    GACUAGUCG   CCU CGAC AU      U
GGACCGCAUCAACAAAAAU    U- -   CAGU         CGA^  -    U  GUUGCC 
.       110       100          90        80         70        60
Deep sequencing
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3' NTU Yes
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Bfl-Mir-4868-P1_5p* (predicted)

mirBase accessionNone
Sequence
0- CUGAUCAGCCCGGAAGCUGUUA -22
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Mature sequence

Bfl-Mir-4868-P1_3p

mirBase accessionMIMAT0020104
Sequence
38- UCAGCUCCAGCGCUGAUCAGUG -60
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