MirGeneDB 3.0

MirGeneDB ID

Bpl-Mir-12598-P1a

Family name MIR-12598 (all species)
Seed ACUGUUU
Species Monogonont Rotifer 1 (Brachionus plicatilis)
MiRBase ID
Paralogues Bpl-Mir-12598-P1b  Bpl-Mir-12598-P2a  Bpl-Mir-12598-P2b  Bpl-Mir-12598-P3a  Bpl-Mir-12598-P3b 
Orthologues Ava-Mir-12598-P1a 
Node of Origin (locus) B. plicatilis
Node of Origin (family) Rotifera
Genome context
(Bpl_ASM1027981)
QEOQ01000670.1: 1235786-1235850 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AUCAUCAACAUUAGCAGUGUCACGAGAUAGAACUGUUUAUAAAUAGCCUCGCUUGUUAGAGAAGCAUUUAUGUGAGGGUAUUUCUAAGCAGUAAUUGUUCGGACAUCUAUUCAUCAACCCAAGUC
Get precursor sequence
Structure
        10           20        30        40        50        60  
AUCAUCAACAUUAGCAG---|   A    AUAGA        U     G      UUGUUAGAG 
                    UGUC CGAG     ACUGUUUA AAAUA CCUCGC         \
                    ACAG GCUU     UGACGAAU UUUAU GGAGUG         A
CUGAACCCAACUACUUAUCU^   -    GUUAA        C     G      UAUUUACGA 
   120       110        100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Bpl-Mir-12598-P1a_5p

mirBase accessionNone
Sequence
0- AACUGUUUAUAAAUAGCCUCGC -22
Get sequence
Star sequence

Bpl-Mir-12598-P1a_3p*

mirBase accessionNone
Sequence
43- GAGGGUAUUUCUAAGCAGUAAU -65
Get sequence