| MirGeneDB ID | Bpl-Mir-12598-P1a |
|---|
| Family name |
MIR-12598 (all species) |
|---|
| Seed |
ACUGUUU |
|---|
| Species |
Monogonont Rotifer 1 (Brachionus plicatilis) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Bpl-Mir-12598-P1b
Bpl-Mir-12598-P2a
Bpl-Mir-12598-P2b
Bpl-Mir-12598-P3a
Bpl-Mir-12598-P3b
|
|---|
| Orthologues |
Ava-Mir-12598-P1a
|
|---|
| Node of Origin (locus) |
B. plicatilis
|
|---|
| Node of Origin (family) |
Rotifera
|
|---|
Genome context
(Bpl_ASM1027981) |
QEOQ01000670.1: 1235786-1235850 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AUCAUCAACAUUAGCAGUGUCACGAGAUAGAACUGUUUAUAAAUAGCCUCGCUUGUUAGAGAAGCAUUUAUGUGAGGGUAUUUCUAAGCAGUAAUUGUUCGGACAUCUAUUCAUCAACCCAAGUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AUCAUCAACAUUAGCAG---| A AUAGA U G UUGUUAGAG
UGUC CGAG ACUGUUUA AAAUA CCUCGC \
ACAG GCUU UGACGAAU UUUAU GGAGUG A
CUGAACCCAACUACUUAUCU^ - GUUAA C G UAUUUACGA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Bpl-Mir-12598-P1a_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AACUGUUUAUAAAUAGCCUCGC -22
Get sequence
|
|---|
| Star sequence |
Bpl-Mir-12598-P1a_3p* |
| mirBase accession | None |
|---|
| Sequence |
43- GAGGGUAUUUCUAAGCAGUAAU -65
Get sequence
|
|---|
