| MirGeneDB ID | Ava-Mir-12598-P1a |
|---|
| Family name |
MIR-12598 (all species) |
|---|
| Seed |
ACUGUUC |
|---|
| Species |
Bdelloid rotifer (Adineta vaga) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Ava-Mir-12598-P1b
Ava-Mir-12598-P2a
Ava-Mir-12598-P2b
Ava-Mir-12598-P3
Ava-Mir-12598-P4a
Ava-Mir-12598-P4b
Ava-Mir-12598-P5a
Ava-Mir-12598-P5b
Ava-Mir-12598-P6a
Ava-Mir-12598-P6b
Ava-Mir-12598-P7a
Ava-Mir-12598-P7b
|
|---|
| Orthologues |
Bpl-Mir-12598-P1a
|
|---|
| Node of Origin (locus) |
A. vaga
|
|---|
| Node of Origin (family) |
Rotifera
|
|---|
Genome context
(GCA_021613535.1_ASM2161353v1_AVA) |
CP075497.1: 2491467-2491526 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AAAUGAAUUUUUAUUUUGUGUAAGUUAGGCAACUGUUCAGUUAUACCUCGCUCGGAUAUUAGUAGGAGCGAAGUACCACUGAACGGUAGUCGAAUGAACAAUCAAUCUUCGAUAUUUACC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AAAUGAAUUUUUAUUUUG--| AA A A UA C CGGAUA
UGU GUU GGC ACUGUUCAGU UAC UCGCU U
ACA UAA CUG UGGCAAGUCA AUG AGCGA U
CCAUUUAUAGCUUCUAACUA^ AG G A CC A GGAUGA
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Ava-Mir-12598-P1a_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AACUGUUCAGUUAUACCUCGCU -22
Get sequence
|
|---|
| Star sequence |
Ava-Mir-12598-P1a_3p* |
| mirBase accession | None |
|---|
| Sequence |
38- CGAAGUACCACUGAACGGUAGU -60
Get sequence
|
|---|
