MirGeneDB 3.0

MirGeneDB ID

Ava-Mir-12598-P5b

Family name MIR-12598 (all species)
Seed CACUGUU
Species Bdelloid rotifer (Adineta vaga)
MiRBase ID
Paralogues Ava-Mir-12598-P1a  Ava-Mir-12598-P1b  Ava-Mir-12598-P2a  Ava-Mir-12598-P2b  Ava-Mir-12598-P3  Ava-Mir-12598-P4a  Ava-Mir-12598-P4b  Ava-Mir-12598-P5a  Ava-Mir-12598-P6a  Ava-Mir-12598-P6b  Ava-Mir-12598-P7a  Ava-Mir-12598-P7b 
Orthologues
Node of Origin (locus) A. vaga
Node of Origin (family) Rotifera
Genome context
(GCA_021613535.1_ASM2161353v1_AVA)
CP075492.1: 12548457-12548519 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AUCGGUUAGUUUUUAUUUCUUCACGCACUUUCACUGUUCGAUGUGCCUCCCUUGGGUACAUGAAAAGACUAGGGAGAUGCAGGGACGGUGAUAAUGCGUAUAAGAAAGCAAAUCUUUUUUUAU
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Structure
        10         20         30        40        50        60 
AUCGGUUAGUUUUUAUU-    C-|    CUU         GA   GC      UGGGUACA 
                  UCUU  ACGCA   UCACUGUUC  UGU  CUCCCU        U
                  AGAA  UGCGU   AGUGGCAGG  ACG  GAGGGA        G
UAUUUUUUUCUAAACGAA    UA^    AAU         G-   UA      UCAGAAAA 
 120       110       100        90         80        70
Deep sequencing
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3' NTU Yes
MotifsNo
Tissue expression
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Mature sequence

Ava-Mir-12598-P5b_5p

mirBase accessionNone
Sequence
0- UCACUGUUCGAUGUGCCUCCCUU -23
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Star sequence

Ava-Mir-12598-P5b_3p*

mirBase accessionNone
Sequence
42- GGAGAUGCAGGGACGGUGAUA -63
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