MirGeneDB ID | Ava-Mir-12598-P7a |
Family name |
MIR-12598 (all species) |
Seed |
ACUGUUC |
Species |
Bdelloid rotifer (Adineta vaga) |
MiRBase ID |
|
Paralogues |
Ava-Mir-12598-P1a
Ava-Mir-12598-P1b
Ava-Mir-12598-P2a
Ava-Mir-12598-P2b
Ava-Mir-12598-P3
Ava-Mir-12598-P4a
Ava-Mir-12598-P4b
Ava-Mir-12598-P5a
Ava-Mir-12598-P5b
Ava-Mir-12598-P6a
Ava-Mir-12598-P6b
Ava-Mir-12598-P7b
|
Orthologues |
|
Node of Origin (locus) |
A. vaga
|
Node of Origin (family) |
Rotifera
|
Genome context (GCA_021613535.1_ASM2161353v1_AVA) |
CP075492.1: 12548345-12548405 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUUUUUUAUUUUCUAGUCGUGUGUAUUAGCUACUGUUCUGCUGUGCCACGCUAUGCGAAAUGAAAGACAGCGAAGUACAGCAAACAGUUACUAAUGCCAUUUGUACGUGAACUUAUUUCCA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UUUUUUUAUUUUCUAGUC---| U CU C CA AUGCGAA
GUG GUAUUAG ACUGUU UGCUGUGC CGCU A
UAC CGUAAUC UGACAA ACGACAUG GCGA U
ACCUUUAUUCAAGUGCAUGUU^ - AU - AA CAGAAAG
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Yes
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Ava-Mir-12598-P7a_5p |
mirBase accession | None |
Sequence |
0- UACUGUUCUGCUGUGCCACGCU -22
Get sequence
|
Star sequence |
Ava-Mir-12598-P7a_3p* |
mirBase accession | None |
Sequence |
40- CGAAGUACAGCAAACAGUUAC -61
Get sequence
|