| MirGeneDB ID | Ava-Mir-12598-P2a |
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| Family name |
MIR-12598 (all species) |
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| Seed |
ACUGUUC |
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| Species |
Bdelloid rotifer (Adineta vaga) |
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| MiRBase ID |
|
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| Paralogues |
Ava-Mir-12598-P1a
Ava-Mir-12598-P1b
Ava-Mir-12598-P2b
Ava-Mir-12598-P3
Ava-Mir-12598-P4a
Ava-Mir-12598-P4b
Ava-Mir-12598-P5a
Ava-Mir-12598-P5b
Ava-Mir-12598-P6a
Ava-Mir-12598-P6b
Ava-Mir-12598-P7a
Ava-Mir-12598-P7b
|
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| Orthologues |
Bpl-Mir-12598-P2a
|
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| Node of Origin (locus) |
A. vaga
|
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| Node of Origin (family) |
Rotifera
|
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Genome context
(GCA_021613535.1_ASM2161353v1_AVA) |
CP075495.1: 1287808-1287874 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UAAAAAGUAACAAAAUCAGACACAAAGAAAAACUGUUCAUCUAGCCUCGCCUGUGUAUUUCUAAUCUAUUAAGGCGGGAGCAGGUUGUGACAGUCAUUAUAUGUGUCUAUGAACGUCGAAAACAAUG
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
UAAAAAGUAACAAAAUC-- AAG AA - U A -| GUGUAUUUC
AGACACA AA ACUGUU CA CU GC CUCGCCU \
UCUGUGU UU UGACAG GU GG CG GGGCGGA U
GUAACAAAAGCUGCAAGUA AUA AC U U A A^ AUUAUCUAA
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
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| Mature sequence |
Ava-Mir-12598-P2a_5p |
| mirBase accession | None |
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| Sequence |
0- AACUGUUCAUCUAGCCUCGCCU -22
Get sequence
|
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| Star sequence |
Ava-Mir-12598-P2a_3p* |
| mirBase accession | None |
|---|
| Sequence |
43- GCGGGAGCAGGUUGUGACAGUCAU -67
Get sequence
|
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