| MirGeneDB ID | Ava-Mir-12598-P1b |
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| Family name |
MIR-12598 (all species) |
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| Seed |
ACUGUUC |
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| Species |
Bdelloid rotifer (Adineta vaga) |
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| MiRBase ID |
|
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| Paralogues |
Ava-Mir-12598-P1a
Ava-Mir-12598-P2a
Ava-Mir-12598-P2b
Ava-Mir-12598-P3
Ava-Mir-12598-P4a
Ava-Mir-12598-P4b
Ava-Mir-12598-P5a
Ava-Mir-12598-P5b
Ava-Mir-12598-P6a
Ava-Mir-12598-P6b
Ava-Mir-12598-P7a
Ava-Mir-12598-P7b
|
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| Orthologues |
Bpl-Mir-12598-P1b
|
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| Node of Origin (locus) |
A. vaga
|
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| Node of Origin (family) |
Rotifera
|
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Genome context
(GCA_021613535.1_ASM2161353v1_AVA) |
CP075492.1: 12548233-12548292 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UAUUUCCAAGUUUUCUUCUAUCUAUUAGACAACUGUUCAGUUAUACCUCGCUCGGAUUUAUGAAUGAGCGAUGCAUUCCUGGACAGUAGUCGAAUUGAUAAAUUAUCAUCGUUUAUGUAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UAUUUCCAAGUUUUCUUC--| U A A UU ACC CGGAUU
UAUC AUU GAC ACUGUUCAG AU UCGCU U
AUAG UAA CUG UGACAGGUC UA AGCGA A
UAUGUAUUUGCUACUAUUAA^ U G A CU CGU GUAAGU
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Ava-Mir-12598-P1b_5p |
| mirBase accession | None |
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| Sequence |
0- AACUGUUCAGUUAUACCUCGCU -22
Get sequence
|
|---|
| Star sequence |
Ava-Mir-12598-P1b_3p* |
| mirBase accession | None |
|---|
| Sequence |
38- CGAUGCAUUCCUGGACAGUAGU -60
Get sequence
|
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