| MirGeneDB ID | Bpl-Mir-12598-P1b |
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| Family name |
MIR-12598 (all species) |
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| Seed |
ACUGUUU |
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| Species |
Monogonont Rotifer 1 (Brachionus plicatilis) |
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| MiRBase ID |
|
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| Paralogues |
Bpl-Mir-12598-P1a
Bpl-Mir-12598-P2a
Bpl-Mir-12598-P2b
Bpl-Mir-12598-P3a
Bpl-Mir-12598-P3b
|
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| Orthologues |
Ava-Mir-12598-P1b
|
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| Node of Origin (locus) |
B. plicatilis
|
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| Node of Origin (family) |
Rotifera
|
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Genome context
(Bpl_ASM1027981) |
QEOQ01000670.1: 1230425-1230489 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CAUCAUUUCAUCAUCCAUGUCACGAGAUAGAACUGUUUAUAAAUAGCCUCGCUUGUUAGAGAAGCAUUUAUGUGAGGGUAUUUCUAAGCAGUAAUUGUUCGGACAUCUAUUCAUCAACACAAGUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CAUCAUUUCAUCAUCCA---| A AUAGA U G UUGUUAGAG
UGUC CGAG ACUGUUUA AAAUA CCUCGC \
ACAG GCUU UGACGAAU UUUAU GGAGUG A
CUGAACACAACUACUUAUCU^ - GUUAA C G UAUUUACGA
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Bpl-Mir-12598-P1b_5p |
| mirBase accession | None |
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| Sequence |
0- AACUGUUUAUAAAUAGCCUCGC -22
Get sequence
|
|---|
| Star sequence |
Bpl-Mir-12598-P1b_3p* |
| mirBase accession | None |
|---|
| Sequence |
43- GAGGGUAUUUCUAAGCAGUAAU -65
Get sequence
|
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