| MirGeneDB ID | Bpl-Mir-12598-P2a |
|---|
| Family name |
MIR-12598 (all species) |
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| Seed |
CACUGUU |
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| Species |
Monogonont Rotifer 1 (Brachionus plicatilis) |
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| MiRBase ID |
|
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| Paralogues |
Bpl-Mir-12598-P1a
Bpl-Mir-12598-P1b
Bpl-Mir-12598-P2b
Bpl-Mir-12598-P3a
Bpl-Mir-12598-P3b
|
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| Orthologues |
Ava-Mir-12598-P2a
|
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| Node of Origin (locus) |
B. plicatilis
|
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| Node of Origin (family) |
Rotifera
|
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Genome context
(Bpl_ASM1027981) |
QEOQ01000670.1: 1229925-1229988 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UAGUGUCAUCGCUAAAUAAGUAUCAGUGUUUCACUGUUUGUCAAUAGCCUCGCUAGAUGUGUUCCUAGUGCCUGGCUAUUGCAAAUAGUCGAUAUUCUGAACCUGUUUUCAUCAAAUACAAAAA
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
UAGUGUCAUCGCUAAAUA-- UA U U -| U UC UAGAUGU
AG UCAG GU UC ACUGUUUG CAAUAGCC GC G
UC AGUC UA AG UGAUAAAC GUUAUCGG CG U
AAAAACAUAAACUACUUUUG CA U U C^ - UC UGAUCCU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Bpl-Mir-12598-P2a_5p |
| mirBase accession | None |
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| Sequence |
0- UCACUGUUUGUCAAUAGCCUCGC -23
Get sequence
|
|---|
| Star sequence |
Bpl-Mir-12598-P2a_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
39- GCCUGGCUAUUGCAAAUAGUCGAUA -64
Get sequence
|
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