MirGeneDB ID | Ava-Mir-12598-P3 |
Family name |
MIR-12598 (all species) |
Seed |
CACUGUU |
Species |
Bdelloid rotifer (Adineta vaga) |
MiRBase ID |
|
Paralogues |
Ava-Mir-12598-P1a
Ava-Mir-12598-P1b
Ava-Mir-12598-P2a
Ava-Mir-12598-P2b
Ava-Mir-12598-P4a
Ava-Mir-12598-P4b
Ava-Mir-12598-P5a
Ava-Mir-12598-P5b
Ava-Mir-12598-P6a
Ava-Mir-12598-P6b
Ava-Mir-12598-P7a
Ava-Mir-12598-P7b
|
Orthologues |
Bko-Mir-12598-P3c
Bko-Mir-12598-P3d
Bpl-Mir-12598-P3a
Bpl-Mir-12598-P3b
|
Node of Origin (locus) |
A. vaga
|
Node of Origin (family) |
Rotifera
|
Genome context (GCA_021613535.1_ASM2161353v1_AVA) |
CP075494.1: 12734223-12734281 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGUGCUAGAGACGAAAUGUGAGACGAGAGGUCACUGUUUCGCAGACUAAGCGUUGAACUAUGAAUCGCUUGGCCUGUGAGACUGUGCUCUCAAAGUCAAACUAAACCGGUGGUUGUCAC
Get precursor sequence
|
Structure | 10 20 30 40 50
UGUGCUAGAGACGAAAU- GA GA-| GU U A UUGAAC
GU GAC GAG CAC GUUUCGCAG CUAAGCG \
CA CUG CUC GUG CAGAGUGUC GGUUCGC U
CACUGUUGGUGGCCAAAU AA AAA^ UC U C UAAGUA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
|
|
Mature sequence |
Ava-Mir-12598-P3_5p |
mirBase accession | None |
Sequence |
0- UCACUGUUUCGCAGACUAAGCG -22
Get sequence
|
Star sequence |
Ava-Mir-12598-P3_3p* |
mirBase accession | None |
Sequence |
37- CUUGGCCUGUGAGACUGUGCUC -59
Get sequence
|