MirGeneDB 3.0

MirGeneDB ID

Ava-Mir-12598-P3

Family name MIR-12598 (all species)
Seed CACUGUU
Species Bdelloid rotifer (Adineta vaga)
MiRBase ID
Paralogues Ava-Mir-12598-P1a  Ava-Mir-12598-P1b  Ava-Mir-12598-P2a  Ava-Mir-12598-P2b  Ava-Mir-12598-P4a  Ava-Mir-12598-P4b  Ava-Mir-12598-P5a  Ava-Mir-12598-P5b  Ava-Mir-12598-P6a  Ava-Mir-12598-P6b  Ava-Mir-12598-P7a  Ava-Mir-12598-P7b 
Orthologues Bko-Mir-12598-P3c  Bko-Mir-12598-P3d  Bpl-Mir-12598-P3a  Bpl-Mir-12598-P3b 
Node of Origin (locus) A. vaga
Node of Origin (family) Rotifera
Genome context
(GCA_021613535.1_ASM2161353v1_AVA)
CP075494.1: 12734223-12734281 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UGUGCUAGAGACGAAAUGUGAGACGAGAGGUCACUGUUUCGCAGACUAAGCGUUGAACUAUGAAUCGCUUGGCCUGUGAGACUGUGCUCUCAAAGUCAAACUAAACCGGUGGUUGUCAC
Get precursor sequence
Structure
        10         20         30        40        50         
UGUGCUAGAGACGAAAU-  GA   GA-|  GU   U         A       UUGAAC 
                  GU  GAC   GAG  CAC GUUUCGCAG CUAAGCG      \
                  CA  CUG   CUC  GUG CAGAGUGUC GGUUCGC      U
CACUGUUGGUGGCCAAAU  AA   AAA^  UC   U         C       UAAGUA 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
To To
Mature sequence

Ava-Mir-12598-P3_5p

mirBase accessionNone
Sequence
0- UCACUGUUUCGCAGACUAAGCG -22
Get sequence
Star sequence

Ava-Mir-12598-P3_3p*

mirBase accessionNone
Sequence
37- CUUGGCCUGUGAGACUGUGCUC -59
Get sequence