MirGeneDB 3.0
MirGeneDB ID

Bko-Mir-12598-P3d

Family name MIR-12598 (all species)
Seed ACUGUUU
Species Monogonont Rotifer 2 (Brachionus koreanus)
MiRBase ID
Paralogues Bko-Mir-12598-P1c  Bko-Mir-12598-P1d  Bko-Mir-12598-P2c  Bko-Mir-12598-P2d  Bko-Mir-12598-P3c 
Orthologues Ava-Mir-12598-P3 
Node of Origin (locus) B. koreanus
Node of Origin (family) Rotifera
Genome context
(Brachionus_koreanusGCA_016987375.1_Bk_v0.5.4_genom)		 PJRA01000016.1: 494146-494210 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
ACAAAAUUAGUUUUUUCUCAAUUCCACUUUUACUGUUUUUUGAUAGCCUCGCGUGUAUCAAUGUGUCUGGUCGCGAGACUAUGACAAACAGUUAAAGUUGAAUAAUCACACCGACUUGGUUAAUU
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Structure
        10        20          30        40        50        60  
ACAAAAUUAGUUUUUUCUCA--|   C     U       U  G    C      UGUAUCAA 
                      AUUC ACUUU ACUGUUU UU AUAG CUCGCG        U
                      UAAG UGAAA UGACAAA AG UAUC GAGCGC        G
UUAAUUGGUUCAGCCACACUAA^   U     U       C  -    A      UGGUCUGU 
   120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
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Mature sequence

Bko-Mir-12598-P3d_5p
mirBase accessionNone
Sequence 
0- UACUGUUUUUUGAUAGCCUCGCG -23
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Star sequence

Bko-Mir-12598-P3d_3p*
mirBase accessionNone
Sequence 
43- CGAGACUAUGACAAACAGUUAA -65
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