| MirGeneDB ID | Bko-Mir-12598-P3c |
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| Family name |
MIR-12598 (all species) |
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| Seed |
ACUGUUU |
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| Species |
Monogonont Rotifer 2 (Brachionus koreanus) |
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| MiRBase ID |
|
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| Paralogues |
Bko-Mir-12598-P1c
Bko-Mir-12598-P1d
Bko-Mir-12598-P2c
Bko-Mir-12598-P2d
Bko-Mir-12598-P3d
|
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| Orthologues |
Ava-Mir-12598-P3
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| Node of Origin (locus) |
B. koreanus
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| Node of Origin (family) |
Rotifera
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Genome context
(Brachionus_koreanusGCA_016987375.1_Bk_v0.5.4_genom) |
PJRA01000016.1: 491223-491287 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UACAAAAUUAGUUUUUCUCAAUUCCACUUUUACUGUUUUUUGAUAGCCUCGCGUGUAUCAAUGUGUCUGGUCGCGAGACUAUGACAAACAGUUAAAGUUGAAUAAUCACACCGACUUGGUUAAUU
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
UACAAAAUUAGUUUUUCUCA--| C U U G C UGUAUCAA
AUUC ACUUU ACUGUUU UU AUAG CUCGCG U
UAAG UGAAA UGACAAA AG UAUC GAGCGC G
UUAAUUGGUUCAGCCACACUAA^ U U C - A UGGUCUGU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
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| Mature sequence |
Bko-Mir-12598-P3c_5p |
| mirBase accession | None |
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| Sequence |
0- UACUGUUUUUUGAUAGCCUCGCG -23
Get sequence
|
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| Star sequence |
Bko-Mir-12598-P3c_3p* |
| mirBase accession | None |
|---|
| Sequence |
43- CGAGACUAUGACAAACAGUUAA -65
Get sequence
|
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