MirGeneDB ID | Bko-Mir-12598-P2c |
Family name |
MIR-12598 (all species) |
Seed |
CACUGUU |
Species |
Monogonont Rotifer 2 (Brachionus koreanus) |
MiRBase ID |
|
Paralogues |
Bko-Mir-12598-P1c
Bko-Mir-12598-P1d
Bko-Mir-12598-P2d
Bko-Mir-12598-P3c
Bko-Mir-12598-P3d
|
Orthologues |
|
Node of Origin (locus) |
B. koreanus
|
Node of Origin (family) |
Rotifera
|
Genome context (Brachionus_koreanusGCA_016987375.1_Bk_v0.5.4_genom) |
PJRA01000016.1: 491101-491164 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUAUUGUUAAAUAAUUAAAGUAUCAGUGUUUCACUGUUUGUCAAUAGCCUCGCUAGCUGUGUACCUAGUGCCUGGCUAUUGCAAAUAGUCGAUAUUCUGGACUUGUUAUCAUCAUAUCUUAUUU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UUAUUGUUAAAUAAUUA---| A U U - U UC UAGCUGU
AAGU UCAG GU UC ACUGUUUG CAAUAGCC GC G
UUCA GGUC UA AG UGAUAAAC GUUAUCGG CG U
UUUAUUCUAUACUACUAUUG^ - U U C - UC UGAUCCA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | ALL OF Novel 3s LINKS WERE FAULTY.... |
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Bko-Mir-12598-P2c_5p |
mirBase accession | None |
Sequence |
0- UCACUGUUUGUCAAUAGCCUCGC -23
Get sequence
|
Star sequence |
Bko-Mir-12598-P2c_3p* (predicted) |
mirBase accession | None |
Sequence |
39- GCCUGGCUAUUGCAAAUAGUCGAUA -64
Get sequence
|