| MirGeneDB ID | Bko-Mir-12598-P2d |
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| Family name |
MIR-12598 (all species) |
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| Seed |
CACUGUU |
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| Species |
Monogonont Rotifer 2 (Brachionus koreanus) |
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| MiRBase ID |
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| Paralogues |
Bko-Mir-12598-P1c
Bko-Mir-12598-P1d
Bko-Mir-12598-P2c
Bko-Mir-12598-P3c
Bko-Mir-12598-P3d
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| Orthologues |
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| Node of Origin (locus) |
B. koreanus
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| Node of Origin (family) |
Rotifera
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Genome context
(Brachionus_koreanusGCA_016987375.1_Bk_v0.5.4_genom) |
PJRA01000016.1: 494024-494087 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UUAUUGUUAAAUAAUUAAAGUAUCAGUGUUUCACUGUUUGUCAAUAGCCUCGCUAGCUGUGUACCUAGUGCCUGGCUAUUGCAAAUAGUCGAUAUUCUGGACUUGUUAUCAUCAUAUCUUAUUU
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
UUAUUGUUAAAUAAUUA---| A U U - U UC UAGCUGU
AAGU UCAG GU UC ACUGUUUG CAAUAGCC GC G
UUCA GGUC UA AG UGAUAAAC GUUAUCGG CG U
UUUAUUCUAUACUACUAUUG^ - U U C - UC UGAUCCA
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | ALL OF Novel 3s LINKS WERE FAULTY.... |
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| 3' NTU |
Unknown
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Bko-Mir-12598-P2d_5p |
| mirBase accession | None |
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| Sequence |
0- UCACUGUUUGUCAAUAGCCUCGC -23
Get sequence
|
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| Star sequence |
Bko-Mir-12598-P2d_3p* (predicted) |
| mirBase accession | None |
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| Sequence |
39- GCCUGGCUAUUGCAAAUAGUCGAUA -64
Get sequence
|
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