| MirGeneDB ID | Bko-Mir-12598-P1d |
|---|
| Family name |
MIR-12598 (all species) |
|---|
| Seed |
ACUGUUU |
|---|
| Species |
Monogonont Rotifer 2 (Brachionus koreanus) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Bko-Mir-12598-P1c
Bko-Mir-12598-P2c
Bko-Mir-12598-P2d
Bko-Mir-12598-P3c
Bko-Mir-12598-P3d
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
B. koreanus
|
|---|
| Node of Origin (family) |
Rotifera
|
|---|
Genome context
(Brachionus_koreanusGCA_016987375.1_Bk_v0.5.4_genom) |
PJRA01000016.1: 494495-494558 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UAGAUAUCAAUAUGUCAUGUCACGAAAAAGAACUGUUUAUAAAUAGCCUCGCUUGUAAAUGAUGCCUAAUGCGAGGGUAUUUUUAAGCAGUAAUCGUUCGGGCACAAAAACAACAAUUUCAAAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UAGAUAUCAAUAUGUCA---| A AAAGA U G UUGUAAAU
UGUC CGAA ACUGUUUA AAAUA CCUCGC G
ACGG GCUU UGACGAAU UUUAU GGAGCG A
UAAACUUUAACAACAAAAAC^ - GCUAA U G UAAUCCGU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Bko-Mir-12598-P1d_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AACUGUUUAUAAAUAGCCUCGC -22
Get sequence
|
|---|
| Star sequence |
Bko-Mir-12598-P1d_3p* |
| mirBase accession | None |
|---|
| Sequence |
42- GAGGGUAUUUUUAAGCAGUAAU -64
Get sequence
|
|---|
