| MirGeneDB ID | Ava-Mir-12598-P5a |
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| Family name |
MIR-12598 (all species) |
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| Seed |
CACUGUU |
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| Species |
Bdelloid rotifer (Adineta vaga) |
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| MiRBase ID |
|
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| Paralogues |
Ava-Mir-12598-P1a
Ava-Mir-12598-P1b
Ava-Mir-12598-P2a
Ava-Mir-12598-P2b
Ava-Mir-12598-P3
Ava-Mir-12598-P4a
Ava-Mir-12598-P4b
Ava-Mir-12598-P5b
Ava-Mir-12598-P6a
Ava-Mir-12598-P6b
Ava-Mir-12598-P7a
Ava-Mir-12598-P7b
|
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| Orthologues |
|
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| Node of Origin (locus) |
A. vaga
|
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| Node of Origin (family) |
Rotifera
|
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Genome context
(GCA_021613535.1_ASM2161353v1_AVA) |
CP075497.1: 2491217-2491279 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GUCAUAUACAAUCUCUUCUUAUGUACAUUAUCACUGUUCGAUGUGCCUCCCUUGAGUGAUAGGAAAGACUAGGGAGAUGCAGGAAUAGUGCAAAUGCGCAGAAGAAUUUCCUAUUUUCUUUUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GUCAUAUACAAUCUCUU--| A UA AU GA GC UGAGUGAU
CUU UG CAUU CACUGUUC UGU CUCCCU A
GAA AC GUAA GUGAUAAG ACG GAGGGA G
UUUUUCUUUUAUCCUUUAA^ G GC AC G- UA UCAGAAAG
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Mature sequence |
Ava-Mir-12598-P5a_5p |
| mirBase accession | None |
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| Sequence |
0- UCACUGUUCGAUGUGCCUCCCUU -23
Get sequence
|
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| Star sequence |
Ava-Mir-12598-P5a_3p* |
| mirBase accession | None |
|---|
| Sequence |
42- GGAGAUGCAGGAAUAGUGCAA -63
Get sequence
|
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