MirGeneDB 3.0
MirGeneDB ID

Cbr-Mir-64-o2

Family name MIR-64 (all species)
Seed AUGACAC
Species Roundworm (Caenorhabditis briggsae)
MiRBase ID cbr-mir-64a
Paralogues Cbr-Mir-64-o1  Cbr-Mir-64-o3  Cbr-Mir-64-o4 
Orthologues Cel-Mir-64-P2 
Node of Origin (locus) C. briggsae
Node of Origin (family) Caenorhabditis
Genome context
(CB4)		 III: 869227-869290 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-64-o2)		 Mir-64-o4 III: 868825-868890 [-] Ensembl
Mir-64-o3 III: 869105-869166 [-] Ensembl
Mir-64-o2 III: 869227-869290 [-] Ensembl
Mir-64-o1 III: 869360-869420 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UUUGAUUCAAGAAUCCUCGGCCUCGCCGACCAUGACACUGAAGCGUGUACGGAUGGAAAGUUGAAGCCUUCCGUUCCGCUAGUGUGCCAUGCAACGGCGAGUGCCUUGGCACUUUGUAUAGUAU
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Structure
        10         20         30         40        50        60 
UUUGAUUCAAGAAUCCUC-   -       AC-|   A   UGA    UGU     UGGAAAG 
                   GGC CUCGCCG   CAUG CAC   AGCG   ACGGA       U
                   CCG GAGCGGC   GUAC GUG   UCGC   UGCCU       U
UAUGAUAUGUUUCACGGUU   U       AAC^   C   UGA    CU-     UCCGAAG 
  120       110       100        90        80         70
Deep sequencing
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CommentIt is unclear if any of the MIR-64 family members in C. briggsae are orthologues of any of the MIR-64 members in C. elegans and thus they are currently classified as orphans pending further data.
3' NTU No
MotifsNo
Tissue expression
-   +
Ea Ma Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Yo Yo
Mature sequence

Cbr-Mir-64-o2_5p
mirBase accessionMIMAT0001292
Sequence 
0- CAUGACACUGAAGCGUGUACGGA -23
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Star sequence

Cbr-Mir-64-o2_3p*
mirBase accessionNone
Sequence 
41- CGUUCCGCUAGUGUGCCAUGCAA -64
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