MirGeneDB 3.0
MirGeneDB ID

Cbr-Mir-64-o3

Family name MIR-64 (all species)
Seed AUGACAC
Species Roundworm (Caenorhabditis briggsae)
MiRBase ID cbr-mir-64b
Paralogues Cbr-Mir-64-o1  Cbr-Mir-64-o2  Cbr-Mir-64-o4 
Orthologues Cel-Mir-64-P3 
Node of Origin (locus) C. briggsae
Node of Origin (family) Caenorhabditis
Genome context
(CB4)		 III: 869105-869166 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-64-o3)		 Mir-64-o4 III: 868825-868890 [-] Ensembl
Mir-64-o3 III: 869105-869166 [-] Ensembl
Mir-64-o2 III: 869227-869290 [-] Ensembl
Mir-64-o1 III: 869360-869420 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UCCGUUAUUCUUUCCGAAGGCCCCGCCUUCCAUGACACCCAAGCGUGUCUGGAAUGACAGAAUGGUCCUCCGGACCGCUGAUGUGGCAUGAACGGCGGGAGUUGGUCCCUAAAAGGACAGGU
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Structure
        10         20         30        40        50        60 
UCCGUUAUUCUUUCCGAA-   -|     UUC    A   CCA    U       AUGACAG 
                   GGC CCCGCC   CAUG CAC   AGCG GUCUGGA       \
                   UUG GGGCGG   GUAC GUG   UCGC CAGGCCU       A
UGGACAGGAAAAUCCCUGG   A^     CAA    G   UAG    -       CCUGGUA 
120       110       100        90        80         70
Deep sequencing
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CommentIt is unclear if any of the MIR-64 family members in C. briggsae are orthologues of any of the MIR-64 members in C. elegans and thus they are currently classified as orphans pending further data.
3' NTU No
MotifsNo
Tissue expression
-   +
Ea Ma Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Yo Yo
Mature sequence

Cbr-Mir-64-o3_5p
mirBase accessionNone
Sequence 
0- CAUGACACCCAAGCGUGUCUGGA -23
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Co-mature sequence

Cbr-Mir-64-o3_3p
mirBase accessionMIMAT0011490
Sequence 
40- CGGACCGCUGAUGUGGCAUGAA -62
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