MirGeneDB 3.0
MirGeneDB ID

Cel-Mir-1823-v2

Family name MIR-1823 (all species)
Seed UACUGGA
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-1823
Paralogues Cel-Mir-1823-v1 
Orthologues
Node of Origin (locus) C. elegans
Node of Origin (family) C. elegans
Genome context
(ce11)		 chrI: 12608635-12608692 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1823-v2)		 Let-7-P9 chrI: 12594583-12594643 [+] UCSC Ensembl
Mir-794 chrI: 12595704-12595762 [+] UCSC Ensembl
Mir-1823-v1 chrI: 12608635-12608692 [+] UCSC Ensembl
Mir-1823-v2 chrI: 12608635-12608692 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUAUAUUAAUUCCCCUUUGACCUGAACGUCACCCCUAACCCUAUGCAGUAUUUGGAGCUCAUAAAAUACUGGAAGUGUUUAGGAGUAAUGCUCAGUUGUCAGAAUUUGUGAAACUUAU
Get precursor sequence
Structure
        10        20          30         40        50        
AUAUAUUAAUUCCCCUUU   --    A   C  C   -|  C  AUG        GGAG 
                  GAC  CUGA CGU AC CCU AAC CU   CAGUAUUU    C
                  CUG  GACU GUA UG GGA UUG GA   GUCAUAAA    U
UAUUCAAAGUGUUUAAGA   UU    C   A  A   U^  U  AG-        AUAC 
      110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
-   +
Da Ea Mi Wi Yo Yo
Star sequence

Cel-Mir-1823-v2_5p*
mirBase accessionMIMAT0032035
Sequence 
0- ACCCCUAACCCUAUGCAGUAUUU -23
Get sequence
Mature sequence

Cel-Mir-1823-v2_3p
mirBase accessionMIMAT0006590
Sequence 
35- AUACUGGAAGUGUUUAGGAGUAA -58
Get sequence
Proposed targets microrna.org: MIMAT0006590
TargetScanWorm: cel-miR-1823