MirGeneDB 3.0

MirGeneDB ID

Cel-Mir-1829-P1

Family name MIR-1829 (all species)
Seed AGGGGAC
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-1829a
Paralogues Cel-Mir-1829-P2  Cel-Mir-1829-P3  Cel-Mir-1829-P4 
Orthologues
Node of Origin (locus) C. elegans
Node of Origin (family) C. elegans
Genome context
(ce11)
chrX: 15588311-15588370 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGCUAAAUCCUUUGUUCAGUUAUUAUAAGUAAGGGGACUUCUAAUUGUUUGUAAAAAAUCGAGUAUUACAACCAUUGGAAUUUCUCUAUUACAUUUUUGGAUUGGCAAAGUUGUAGUACU
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Structure
        10        20        30          40        50          
UGCUAAAUCCUUUGUUCAGUUAUUAUAA   --|     C       U   U   AAAAAU 
                            GUA  AGGGGA UUCUAAU GUU GUA      \
                            CAU  UCUCUU AAGGUUA CAA CAU      C
UCAUGAUGUUGAAACGGUUAGGUUUUUA   UA^     U       C   -   UAUGAG 
.       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Da Ea Mi Wi Yo Yo
Mature sequence

Cel-Mir-1829-P1_5p

mirBase accessionMIMAT0015267
Sequence
0- AAGGGGACUUCUAAUUGUUUGUA -23
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Proposed targets microrna.org: MIMAT0015267
Star sequence

Cel-Mir-1829-P1_3p*

mirBase accessionMIMAT0006769
Sequence
38- CAACCAUUGGAAUUUCUCUAUU -60
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Proposed targets microrna.org: MIMAT0006769
TargetScanWorm: cel-miR-1829a