MirGeneDB 3.0

MirGeneDB ID

Cel-Mir-1829-P2

Family name MIR-1829 (all species)
Seed AGCGAUC
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-1829b
Paralogues Cel-Mir-1829-P1  Cel-Mir-1829-P3  Cel-Mir-1829-P4 
Orthologues
Node of Origin (locus) C. elegans
Node of Origin (family) C. elegans
Genome context
(ce11)
chrX: 14977119-14977178 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCUUAAAUCCUUUGUUAUGUUAUUAUAAGUAAGCGAUCUUCUAGAUGGUUGUAAAACAUCGAGUAUUACAACCACUGGAAUUUCUCUAUUACCUUUUUGGAUGGGCAAAGUUGUAGUACU
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Structure
        10        20        30          40        50          
GCUUAAAUCCUUUGUUAUGUUAUUAUAA   --| C  UC      A        AAACAU 
                            GUA  AG GA  UUCUAG UGGUUGUA      \
                            CAU  UC CU  AAGGUC ACCAACAU      C
UCAUGAUGUUGAAACGGGUAGGUUUUUC   UA^ U  UU      -        UAUGAG 
.       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Da Ea Mi Wi Yo Yo
Mature sequence

Cel-Mir-1829-P2_5p

mirBase accessionMIMAT0006770
Sequence
0- AAGCGAUCUUCUAGAUGGUUGUA -23
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Proposed targets microrna.org: MIMAT0006770
TargetScanWorm: cel-miR-1829b
Star sequence

Cel-Mir-1829-P2_3p*

mirBase accessionMIMAT0032037
Sequence
38- CAACCACUGGAAUUUCUCUAUU -60
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