MirGeneDB 3.0

MirGeneDB ID

Cel-Mir-1829-P4

Family name MIR-1829 (all species)
Seed AGAGCGC
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-4812
Paralogues Cel-Mir-1829-P1  Cel-Mir-1829-P2  Cel-Mir-1829-P3 
Orthologues
Node of Origin (locus) C. elegans
Node of Origin (family) C. elegans
Genome context
(ce11)
chrX: 15242784-15242843 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1829-P4)
Mir-1829-P3 chrX: 15236364-15236423 [-] UCSC Ensembl
Mir-1829-P4 chrX: 15242784-15242843 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCCUUUGUUCUCUUUUUAUAAGUAAGAAGUAAGAGCGCUUGUAGUGAGUUGUCAAAAAUUGAGUAUGACAACCACUGCAAUUUCUCUAUUACAUUUUUGGAUGGGCAAAAUUGUAUCAAG
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Structure
        10        20         30          40        50          
UCCUUUGUUCUCUUUUUAUAAG      -   --|   CGC        A      AAAAAU 
                      UAAGAA GUA  AGAG   UUGUAGUG GUUGUC      \
                      GUUUUU CAU  UCUC   AACGUCAC CAACAG      U
GAACUAUGUUAAAACGGGUAG-      A   UA^   UUU        -      UAUGAG 
.       110       100         90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Da Ea Mi Wi Yo Yo
Mature sequence

Cel-Mir-1829-P4_5p

mirBase accessionMIMAT0019998
Sequence
0- AAGAGCGCUUGUAGUGAGUUGUC -23
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Star sequence

Cel-Mir-1829-P4_3p*

mirBase accessionMIMAT0019999
Sequence
38- CAACCACUGCAAUUUCUCUAUU -60
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