MirGeneDB 3.0
MirGeneDB ID

Cel-Mir-229

Family name MIR-229 (all species)
Seed AUGACAC
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-229
Paralogues
Orthologues
Node of Origin (locus) C. elegans
Node of Origin (family) C. elegans
Genome context
(ce11)		 chrIII: 2172459-2172561 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-229)		 Mir-229 chrIII: 2172459-2172561 [+] UCSC Ensembl
Mir-64-P1 chrIII: 2172869-2172936 [+] UCSC Ensembl
Mir-64-P2 chrIII: 2173019-2173080 [+] UCSC Ensembl
Mir-64-P3 chrIII: 2173124-2173188 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCCCCUCCCAACGCGGGAAGACUCGCCGGCAAUGACACUGGUUAUCUUUUCCAUCGUGGAAUGCCCCCCAUUGAUUUUUUCCCCUUUUCGGGGGGAAAAAAUUGGAAACGAGAAAGGUAUCGGGUGUCAUAGCCGGCGUGAUCAUCUUCCUCAAGUAUUCCUC
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Structure
        10         20         30        40        50        60        70        80  
CCCCCUCCCAACGCGGGAA-  CU-|      A        GGU        CCA   UGGAAUGCCCCCCAUUGAUUUUUUC 
                    GA   CGCCGGC AUGACACU   UAUCUUUU   UCG                         C
                    CU   GCGGCCG UACUGUGG   AUGGAAAG   AGC                         C
CUCCUUAUGAACUCCUUCUA  AGU^      A        GCU        ---   AAAGGUUAAAAAAGGGGGGCUUUUC 
 160       150       140       130       120          110       100        90
Deep sequencing
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CommentAlthough the seed sequence is the same as the MIR-64 family, and is part of the MIR-64 cluster, the remainder of the sequence is different enough to warrant the recognition of a distinct family.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Da Ea Mi Wi Yo Yo
Mature sequence

Cel-Mir-229_5p
mirBase accessionMIMAT0000284
Sequence 
0- AAUGACACUGGUUAUCUUUUCCAUCG -26
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Proposed targets microrna.org: MIMAT0000284
TargetScanWorm: cel-miR-229
Star sequence

Cel-Mir-229_3p*
mirBase accessionMIMAT0015112
Sequence 
80- AGAAAGGUAUCGGGUGUCAUAGC -103
Get sequence
Proposed targets microrna.org: MIMAT0015112