MirGeneDB 3.0
MirGeneDB ID

Cel-Mir-64-P1

Family name MIR-64 (all species)
Seed AUGACAC
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-64
Paralogues Cel-Mir-64-P2  Cel-Mir-64-P3 
Orthologues Cbr-Mir-64-o1 
Node of Origin (locus) C. elegans
Node of Origin (family) Caenorhabditis
Genome context
(ce11)		 chrIII: 2172869-2172936 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-64-P1)		 Mir-229 chrIII: 2172459-2172561 [+] UCSC Ensembl
Mir-64-P1 chrIII: 2172869-2172936 [+] UCSC Ensembl
Mir-64-P2 chrIII: 2173019-2173080 [+] UCSC Ensembl
Mir-64-P3 chrIII: 2173124-2173188 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUGAACCUCCUCCCCGCUGACCUCGCCGAAUAUGACACUGAAGCGUUACCGAACCGUUUUCCCACACCUGGAUUCGGUGCAACGAUCAGUGGCAUGCUCGGCUAGCGCCAGUUAAGUAUUAUGAUCUA
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Structure
        10        20          30        40          50        60   
CUGAACCUCCUCCCCGCUGAC--  C     A    A      AG   --|      CCGUUUUCC 
                       CU GCCGA UAUG CACUGA  CGU  UACCGAA         \
                       GA CGGCU GUAC GUGACU  GCA  GUGGCUU         C
AUCUAGUAUUAUGAAUUGACCGC  U     C    G      A-   AC^      AGGUCCACA 
      120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Da Ea Mi Wi Yo Yo
Mature sequence

Cel-Mir-64-P1_5p
mirBase accessionMIMAT0000036
Sequence 
0- UAUGACACUGAAGCGUUACCGAA -23
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Proposed targets microrna.org: MIMAT0000036
TargetScanWorm: cel-miR-64
Star sequence

Cel-Mir-64-P1_3p*
mirBase accessionMIMAT0015105
Sequence 
44- CGGUGCAACGAUCAGUGGCAUGCU -68
Get sequence
Proposed targets microrna.org: MIMAT0015105