MirGeneDB 3.0
MirGeneDB ID

Cel-Mir-249

Family name MIR-249 (all species)
Seed CACAGGA
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-249
Paralogues
Orthologues Cbr-Mir-249 
Node of Origin (locus) Caenorhabditis
Node of Origin (family) Caenorhabditis
Genome context
(ce11)		 chrX: 3006454-3006518 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-249)		 Mir-34 chrX: 2969775-2969833 [-] UCSC Ensembl
Mir-785 chrX: 3004687-3004747 [+] UCSC Ensembl
Mir-249 chrX: 3006454-3006518 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAUUGUGUAUCUAUACUCUUGAACGACUAGCAACGCACAAACGUCUUCUGUGCGACAACAUCUGAAUGUUUGUCACAGGACUUUUGAGCGUUGCCAGUCGAAAGAGGAAUUUUUUUAUACAAAUU
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Structure
        10          20        30        40        50         60  
UAUUGUGUAUCUAUACU--|  GAA     A       A    C   UU     -   CAACAU 
                   CUU   CGACU GCAACGC CAAA GUC  CUGUG CGA      C
                   GAG   GCUGA CGUUGCG GUUU CAG  GACAC GUU      U
UUAAACAUAUUUUUUUAAG^  AAA     C       A    U   --     U   UGUAAG 
   120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Da Ea Mi Wi Yo Yo
Star sequence

Cel-Mir-249_5p*
mirBase accessionMIMAT0020338
Sequence 
0- CAACGCACAAACGUCUUCUGUGCGAC -26
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Mature sequence

Cel-Mir-249_3p
mirBase accessionMIMAT0000305
Sequence 
42- UCACAGGACUUUUGAGCGUUGCC -65
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Proposed targets microrna.org: MIMAT0000305
TargetScanWorm: cel-miR-249