MirGeneDB 3.0
MirGeneDB ID

Cel-Mir-52-P2

Family name MIR-52 (all species)
Seed ACCCGUA
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-53
Paralogues Cel-Mir-52-P1 
Orthologues
Node of Origin (locus) Caenorhabditis
Node of Origin (family) Caenorhabditis
Genome context
(ce11)		 chrIV: 11027614-11027676 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-52-P2)		 Mir-277 chrIV: 10994184-10994248 [-] UCSC Ensembl
Mir-10-P2 chrIV: 11026035-11026096 [-] UCSC Ensembl
Mir-52-P2 chrIV: 11027614-11027676 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAUUAUAAAUUUCUCCCGAUUCUGACAGUCCACCCGUACAUUUGUUUCCGUGCUUGACUUCAAAGCUCAAUCACGGCACAAUAUAUGGGUCGCCAGUCAUUGUAGUCGGAAUUUUUUUCAGUU
Get precursor sequence
Structure
        10          20        30        40        50        60  
UAUUAUAAAUUUCUCCCG--| UC    AGUCC       CAU    UU     CUUGACUUC 
                    AU  UGAC     ACCCGUA   UUGU  CCGUG         \
                    UG  ACUG     UGGGUAU   AACA  GGCAC         A
UUGACUUUUUUUAAGGCUGA^ UU    ACCGC       AU-    C-     UAACUCGAA 
 120       110       100        90         80         70
Deep sequencing
Go to detailed chart
CommentAlthough the seed sequence is the same as Mir-10-P2 the remainder of the sequence is distinct enough to warrant the recognition of a distinct family.
3' NTU No
MotifsNo
Tissue expression
-   +
Da Ea Mi Wi Yo Yo
Mature sequence

Cel-Mir-52-P2_5p
mirBase accessionMIMAT0000024
Sequence 
0- CACCCGUACAUUUGUUUCCGUGCU -24
Get sequence
Proposed targets microrna.org: MIMAT0000024
TargetScanWorm: cel-miR-53
Star sequence

Cel-Mir-52-P2_3p*
mirBase accessionMIMAT0020312
Sequence 
41- CACGGCACAAUAUAUGGGUCGC -63
Get sequence