MirGeneDB 3.0
MirGeneDB ID

Cin-Mir-4070

Family name MIR-4070 (all species)
Seed CGAAUGU
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-4070
Paralogues
Orthologues
Node of Origin (locus) C. intestinalis
Node of Origin (family) C. intestinalis
Genome context
(ci3)		 5: 662540-662600 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-4070)		 Mir-4086 5: 662410-662467 [+] UCSC Ensembl
Mir-4070 5: 662540-662600 [+] UCSC Ensembl
Mir-4085 5: 663501-663559 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAAUGAAGUAUUUUCUGUGAUGUCACUGUUUCGAAUGUUAUGCAGGCACGUGCACGUCAUAGAGCUAUGCACGCGUCACGUGACAUCGAACCAGUGCGUCACGCAACAACAUUGGAAACGA
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Structure
        10           20        30        40        50        60 
CAAUGAAGUAUUUUCUG---|    U     U     A       CA   A     ACGUCAU 
                    UGAUG CACUG UUCGA UGUUAUG  GGC CGUGC       \
                    ACUGC GUGAC AAGCU ACAGUGC  CUG GCACG       A
AGCAAAGGUUACAACAACGC^    -     C     -       A-   C     UAUCGAG 
 .       110       100         90         80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
C- C- C- C- C- C- C- C- C- C- Ga La La
Mature sequence

Cin-Mir-4070_5p
mirBase accessionMIMAT0016628
Sequence 
0- UCGAAUGUUAUGCAGGCACGUGC -23
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Star sequence

Cin-Mir-4070_3p*
mirBase accessionMIMAT0016629
Sequence 
39- CACGCGUCACGUGACAUCGAAC -61
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