MirGeneDB 3.0
MirGeneDB ID

Cin-Mir-4086

Family name MIR-4086 (all species)
Seed AUUUUGA
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-4086
Paralogues
Orthologues
Node of Origin (locus) C. intestinalis
Node of Origin (family) C. intestinalis
Genome context
(ci3)		 5: 662410-662467 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-4086)		 Mir-4086 5: 662410-662467 [+] UCSC Ensembl
Mir-4070 5: 662540-662600 [+] UCSC Ensembl
Mir-4085 5: 663501-663559 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAGUUUAGUGCUUCACAACGUGUAAGUCGCGGGAGUUUCCCAUCAAAAUACUUUUUAUAAUUUUAGCAUUUUGAUGGCUACCUCCCAAGGUUUAGGCACGUACUAACUUCCGGGUUCA
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Structure
        10        20          30        40        50        
CAGUUUAGUGCUUCACAA     --| GU GC     UUUC          A  UUUUA 
                  CGUGU  AA  C  GGGAG    CCAUCAAAAU CU     U
                  GCACG  UU  G  CCCUC    GGUAGUUUUA GA     A
ACUUGGGCCUUCAAUCAU     GA^ UG AA     CAUC          C  UUUUA 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
C- C- C- C- C- C- C- C- C- C- Ga La La
Star sequence

Cin-Mir-4086_5p*
mirBase accessionNone
Sequence 
0- GGGAGUUUCCCAUCAAAAUACU -22
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Mature sequence

Cin-Mir-4086_3p
mirBase accessionMIMAT0016661
Sequence 
36- CAUUUUGAUGGCUACCUCCCAA -58
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