MirGeneDB 3.0
MirGeneDB ID

Cin-Mir-4085

Family name MIR-4085 (all species)
Seed CGCACGU
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-4085
Paralogues
Orthologues
Node of Origin (locus) C. intestinalis
Node of Origin (family) C. intestinalis
Genome context
(ci3)		 5: 663501-663559 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-4085)		 Mir-4086 5: 662410-662467 [+] UCSC Ensembl
Mir-4070 5: 662540-662600 [+] UCSC Ensembl
Mir-4085 5: 663501-663559 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAUCAAACAGAUUUCCAUGGUGACCUGGGAUCGCACGUUGUGCAGGCAAGCAGGAAUAGAACAACCUGCUGUGUUGUCCAAUUGUGAAACCAUGUGACCACUUGCCAACCAAUCAGAUG
Get precursor sequence
Structure
        10          20        30        40         50         
CAUCAAACAGAUUUCCA--|   G  C   GA     C    UG   G  -      AAUA 
                   UGGU AC UGG  UCGCA GUUG  CAG CA AGCAGG    G
                   ACCA UG ACC  AGUGU UAAC  GUU GU UCGUCC    A
GUAGACUAACCAACCGUUC^   G  U   AA     -    CU   -  G      AACA 
       110       100        90         80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
C- C- C- C- C- C- C- C- C- C- Ga La La
Mature sequence

Cin-Mir-4085_5p
mirBase accessionMIMAT0016659
Sequence 
0- UCGCACGUUGUGCAGGCAAGCAGG -24
Get sequence
Star sequence

Cin-Mir-4085_3p*
mirBase accessionMIMAT0016660
Sequence 
36- UGCUGUGUUGUCCAAUUGUGAAA -59
Get sequence