MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-1270

Family name MIR-1270 (all species)
Seed GGGAGAG
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Hsa-Mir-1270  Mml-Mir-1270  Pab-Mir-1270 
Node of Origin (locus) Simiiformes
Node of Origin (family) Simiiformes
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021936.1: 18129620-18129678 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACAAUUUACUUUUAAAGGCACGAUAUUAUGUGGGAGAGGAAGAAGAGCUGUGUUGGGUAUAAGAAACAGACUUUUCUUUUUCUUCUGUGUGGCUCUUUGUGCUCACCUGGGGCCGUUCA
Get precursor sequence
Structure
        10        20          30        40         50        
ACAAUUUACUUUUAAAGG     UA--     UG               -|   GUUGGG 
                  CACGA    UUAUG  GGAGAGGAAGAAGAG CUGU      U
                  GUGUU    GGUGU  CUUCUUUUUCUUUUC GACA      A
ACUUGCCGGGGUCCACUC     UCUC     GU               A^   AAGAAU 
       110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsNo
Tissue expression
-   +
To
Mature sequence

Cja-Mir-1270_5p (predicted)
mirBase accessionNone
Sequence 
0- UGGGAGAGGAAGAAGAGCUGUG -22
Get sequence
Star sequence

Cja-Mir-1270_3p* (predicted)
mirBase accessionNone
Sequence 
36- CAGACUUUUCUUUUUCUUCUGUG -59
Get sequence