| MirGeneDB ID | Cja-Mir-1270 |
|---|---|
| Family name | MIR-1270 (all species) |
| Seed | GGGAGAG |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Hsa-Mir-1270 Mml-Mir-1270 Pab-Mir-1270 |
| Node of Origin (locus) | Simiiformes |
| Node of Origin (family) | Simiiformes |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021936.1: 18129620-18129678 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | ACAAUUUACUUUUAAAGGCACGAUAUUAUGUGGGAGAGGAAGAAGAGCUGUGUUGGGUAUAAGAAACAGACUUUUCUUUUUCUUCUGUGUGGCUCUUUGUGCUCACCUGGGGCCGUUCAGet precursor sequence |
| Structure | 10 20 30 40 50 ACAAUUUACUUUUAAAGG UA-- UG -| GUUGGG CACGA UUAUG GGAGAGGAAGAAGAG CUGU U GUGUU GGUGU CUUCUUUUUCUUUUC GACA A ACUUGCCGGGGUCCACUC UCUC GU A^ AAGAAU 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | No |
| Mature sequence | Cja-Mir-1270_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UGGGAGAGGAAGAAGAGCUGUG -22
Get sequence
|
| Star sequence | Cja-Mir-1270_3p* (predicted) |
| mirBase accession | None |
| Sequence |
36- CAGACUUUUCUUUUUCUUCUGUG -59
Get sequence
|
