| MirGeneDB ID | Pab-Mir-1270 |
|---|
| Family name |
MIR-1270 (all species) |
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| Seed |
UGGAGAG |
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| Species |
Sumatran orangutan (Pongo abelii) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Cja-Mir-1270
Hsa-Mir-1270
Mml-Mir-1270
|
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| Node of Origin (locus) |
Simiiformes
|
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| Node of Origin (family) |
Simiiformes
|
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Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054699.2: 20828316-20828374 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GCAAUUUACUUUUAAAGGCACAGUGUUAUACUGGAGAGAUGGAAGAGCUGUGUUGGGUAUAAGUAACAGACUUUUCUUUUUCUUCUAUGUGGCUUUUUGCAUUGUGCUCACCUAGGACC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GCAAUUUACUUUUAAAG-- C U CU U -| GUUGGG
GCA AG GUUAUA GGAGAGA GGAAGAG CUGU U
CGU UU CGGUGU CUUCUUU UCUUUUC GACA A
CCAGGAUCCACUCGUGUUA U U AU U A^ AUGAAU
110 100 90 80 70 60 |
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| Deep sequencing |
|
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| 3' NTU |
Unknown
|
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| Motifs | No |
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Tissue expression
|
|
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| Mature sequence |
Pab-Mir-1270_5p (predicted) |
| mirBase accession | None |
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| Sequence |
0- CUGGAGAGAUGGAAGAGCUGUG -22
Get sequence
|
|---|
| Star sequence |
Pab-Mir-1270_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
36- CAGACUUUUCUUUUUCUUCUAUG -59
Get sequence
|
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