| MirGeneDB ID | Pab-Mir-1270 |
|---|---|
| Family name | MIR-1270 (all species) |
| Seed | UGGAGAG |
| Species | Sumatran orangutan (Pongo abelii) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Cja-Mir-1270 Hsa-Mir-1270 Mml-Mir-1270 |
| Node of Origin (locus) | Simiiformes |
| Node of Origin (family) | Simiiformes |
| Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054699.2: 20828316-20828374 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GCAAUUUACUUUUAAAGGCACAGUGUUAUACUGGAGAGAUGGAAGAGCUGUGUUGGGUAUAAGUAACAGACUUUUCUUUUUCUUCUAUGUGGCUUUUUGCAUUGUGCUCACCUAGGACCGet precursor sequence |
| Structure | 10 20 30 40 50 GCAAUUUACUUUUAAAG-- C U CU U -| GUUGGG GCA AG GUUAUA GGAGAGA GGAAGAG CUGU U CGU UU CGGUGU CUUCUUU UCUUUUC GACA A CCAGGAUCCACUCGUGUUA U U AU U A^ AUGAAU 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | No |
| Mature sequence | Pab-Mir-1270_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- CUGGAGAGAUGGAAGAGCUGUG -22
Get sequence
|
| Star sequence | Pab-Mir-1270_3p* (predicted) |
| mirBase accession | None |
| Sequence |
36- CAGACUUUUCUUUUUCUUCUAUG -59
Get sequence
|
