MirGeneDB 3.0

MirGeneDB ID

Cja-Mir-134

Family name MIR-134 (all species)
Seed GUGACUG
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Bta-Mir-134  Cfa-Mir-134  Cpo-Mir-134  Dno-Mir-134  Eca-Mir-134  Hsa-Mir-134  Mml-Mir-134  Mmr-Mir-134  Mmu-Mir-134  Ocu-Mir-134  Pab-Mir-134  Rno-Mir-134 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)
CM021924.1: 131869096-131869156 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAGAUGUUGGUGUCAGCACCGUCCAGGGUGUGUGACUGGUUGACCAGAGGGGCGUGCACUGUGUUCACCCUGUGGGCCACCUAGUCACCAACCCUCAGCAUCACUCCCACCCCAGGAAGAC
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Structure
        10        20          30        40         50         
GAGAUGUUGGUGUCAGCACC--  CC     GU        U  A-|  G    GCGUGCA 
                      GU  AGGGU  GUGACUGG UG  CCA AGGG       C
                      CG  UCCCA  CACUGAUC AC  GGU UCCC       U
CAGAAGGACCCCACCCUCACUA  AC     AC        C  CG^  G    ACUUGUG 
 .       110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Cja-Mir-134_5p

mirBase accessionNone
Sequence
0- UGUGACUGGUUGACCAGAGGGG -22
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Star sequence

Cja-Mir-134_3p* (predicted)

mirBase accessionNone
Sequence
38- CCUGUGGGCCACCUAGUCACCAA -61
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