MirGeneDB 3.0

MirGeneDB ID

Cpo-Mir-134

Family name MIR-134 (all species)
Seed GUGACUG
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-134
Paralogues
Orthologues Bta-Mir-134  Cfa-Mir-134  Cja-Mir-134  Dno-Mir-134  Eca-Mir-134  Hsa-Mir-134  Mml-Mir-134  Mmr-Mir-134  Mmu-Mir-134  Ocu-Mir-134  Pab-Mir-134  Rno-Mir-134 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(cavPor3)
scaffold_111: 1107399-1107459 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-134)
Mir-154-P1 scaffold_111: 1082082-1082140 [+] UCSC
Mir-154-P2-v2 scaffold_111: 1083270-1083327 [+] UCSC
Mir-154-P2-v1 scaffold_111: 1083271-1083326 [+] UCSC
Mir-154-P3-v1 scaffold_111: 1083727-1083781 [+] UCSC
Mir-154-P3-v2 scaffold_111: 1083728-1083780 [+] UCSC
Mir-154-P4 scaffold_111: 1084914-1084970 [+] UCSC
Mir-154-P5 scaffold_111: 1085473-1085528 [+] UCSC
Mir-154-P6a-v1 scaffold_111: 1085632-1085687 [+] UCSC
Mir-154-P6a-v2 scaffold_111: 1085632-1085687 [+] UCSC
Mir-154-P7 scaffold_111: 1085914-1085971 [+] UCSC
Mir-154-P8-o1 scaffold_111: 1086616-1086675 [+] UCSC
Mir-154-P9 scaffold_111: 1088359-1088414 [+] UCSC
Mir-154-P10 scaffold_111: 1088693-1088749 [+] UCSC
Mir-154-P11 scaffold_111: 1090490-1090547 [+] UCSC
Mir-154-P12 scaffold_111: 1091798-1091855 [+] UCSC
Mir-376-P2 scaffold_111: 1095062-1095119 [+] UCSC
Mir-154-P14 scaffold_111: 1095544-1095600 [+] UCSC
Mir-376-P4 scaffold_111: 1095759-1095816 [+] UCSC
Mir-376-P5 scaffold_111: 1096085-1096142 [+] UCSC
Mir-154-P16 scaffold_111: 1097764-1097823 [+] UCSC
Mir-154-P17 scaffold_111: 1099199-1099261 [+] UCSC
Mir-154-P18 scaffold_111: 1099737-1099794 [+] UCSC
Mir-154-P19 scaffold_111: 1100599-1100662 [+] UCSC
Mir-154-P20 scaffold_111: 1101145-1101203 [+] UCSC
Mir-154-P21 scaffold_111: 1102750-1102809 [+] UCSC
Mir-154-P22 scaffold_111: 1104334-1104387 [+] UCSC
Mir-154-P23 scaffold_111: 1104622-1104679 [+] UCSC
Mir-154-P24 scaffold_111: 1107038-1107095 [+] UCSC
Mir-134 scaffold_111: 1107399-1107459 [+] UCSC
Mir-154-P26 scaffold_111: 1112305-1112362 [+] UCSC
Mir-154-P28-v2 scaffold_111: 1113039-1113094 [+] UCSC
Mir-154-P28-v1 scaffold_111: 1113040-1113093 [+] UCSC
Mir-154-P29 scaffold_111: 1114436-1114495 [+] UCSC
Mir-541 scaffold_111: 1116256-1116321 [+] UCSC
Mir-154-P31 scaffold_111: 1117221-1117276 [+] UCSC
Mir-154-P32 scaffold_111: 1117336-1117391 [+] UCSC
Mir-154-P33 scaffold_111: 1117656-1117711 [+] UCSC
Mir-154-P6c scaffold_111: 1118056-1118114 [+] UCSC
Mir-154-P34 scaffold_111: 1118353-1118408 [+] UCSC
Precursor
(pre-Mir +30nt flank)
GAGAUGUUGGUGCCAGCACCAUCCAGGGUGUGUGACUGGUUGACCAGAGGGGCAUGCACUGUGUUCACCCUGUGGGCCACCUAGUCACCAACCCUCAGCAUCAAUCUCACGCAGGAAGAUU
Get precursor sequence
Structure
        10        20          30        40         50         
GAGAUGUUGGUGCCAGCACCAUCC--     GU        U  A-|  G    GCAUGCA 
                          AGGGU  GUGACUGG UG  CCA AGGG       C
                          UCCCA  CACUGAUC AC  GGU UCCC       U
UUAGAAGGACGCACUCUAACUACGAC     AC        C  CG^  G    ACUUGUG 
 .       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Mature sequence

Cpo-Mir-134_5p

mirBase accessionMIMAT0046990
Sequence
0- UGUGACUGGUUGACCAGAGGGG -22
Get sequence
Star sequence

Cpo-Mir-134_3p*

mirBase accessionMIMAT0046991
Sequence
39- CUGUGGGCCACCUAGUCACCAA -61
Get sequence