Mir-134

MirGeneDB ID

Ocu-Mir-134

Family name

MIR-134 (all species)

Seed

GUGACUG

Species

Rabbit (Oryctolagus cuniculus)

MiRBase ID

ocu-mir-134

Paralogues

Orthologues

Bta-Mir-134 Cfa-Mir-134 Cja-Mir-134 Cpo-Mir-134 Dno-Mir-134 Eca-Mir-134 Hsa-Mir-134 Mml-Mir-134 Mmr-Mir-134 Mmu-Mir-134 Pab-Mir-134 Rno-Mir-134

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(oryCun2_add)

chrUn0352: 143048-143107 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-134)

Mir-154-P1 chrUn0352: 121687-121745 [+] UCSC Ensembl
Mir-154-P2-v2 chrUn0352: 122886-122943 [+] UCSC Ensembl
Mir-154-P2-v1 chrUn0352: 122887-122942 [+] UCSC Ensembl
Mir-154-P3-v1 chrUn0352: 123314-123368 [+] UCSC Ensembl
Mir-154-P3-v2 chrUn0352: 123315-123367 [+] UCSC Ensembl
Mir-154-P5 chrUn0352: 124893-124948 [+] UCSC Ensembl
Mir-154-P6a-v1 chrUn0352: 125054-125109 [+] UCSC Ensembl
Mir-154-P6a-v2 chrUn0352: 125054-125109 [+] UCSC Ensembl
Mir-154-P7 chrUn0352: 125317-125376 [+] UCSC Ensembl
Mir-154-P8-o1 chrUn0352: 126028-126087 [+] UCSC Ensembl
Mir-154-P12 chrUn0352: 130083-130140 [+] UCSC Ensembl
Mir-376-P2 chrUn0352: 132903-132959 [+] UCSC Ensembl
Mir-376-P3 chrUn0352: 133217-133274 [+] UCSC Ensembl
Mir-154-P14 chrUn0352: 133369-133421 [+] UCSC Ensembl
Mir-376-P4 chrUn0352: 133511-133568 [+] UCSC Ensembl
Mir-376-P5 chrUn0352: 133845-133902 [+] UCSC Ensembl
Mir-154-P17 chrUn0352: 136582-136644 [+] UCSC Ensembl
Mir-154-P18 chrUn0352: 137030-137087 [+] UCSC Ensembl
Mir-154-P19 chrUn0352: 137513-137576 [+] UCSC Ensembl
Mir-154-P20 chrUn0352: 138028-138086 [+] UCSC Ensembl
Mir-154-P21 chrUn0352: 139340-139398 [+] UCSC Ensembl
Mir-154-P23 chrUn0352: 141248-141305 [+] UCSC Ensembl
Mir-154-P24 chrUn0352: 142718-142775 [+] UCSC Ensembl
Mir-134 chrUn0352: 143048-143107 [+] UCSC Ensembl
Mir-154-P25 chrUn0352: 143743-143801 [+] UCSC Ensembl
Mir-154-P26 chrUn0352: 147896-147953 [+] UCSC Ensembl
Mir-154-P28-v2 chrUn0352: 149011-149066 [+] UCSC Ensembl
Mir-154-P28-v1 chrUn0352: 149012-149065 [+] UCSC Ensembl
Mir-154-P29 chrUn0352: 150228-150287 [+] UCSC Ensembl
Mir-541 chrUn0352: 152092-152157 [+] UCSC Ensembl
Mir-154-P32 chrUn0352: 152953-153008 [+] UCSC Ensembl
Mir-154-P33 chrUn0352: 153189-153244 [+] UCSC Ensembl
Mir-154-P34 chrUn0352: 153728-153783 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAGAUGUUGGUGCCAGCACCAUCCAGGGUGUGUGACUGGUUGACCAGAGGGCGUGCGCUGUGUUCACCCUGUGGGCCACCUAGUCACCAACCCUCAGCAUCAACCCCACCCCAGGAAGAC

Get precursor sequence

Structure

        10        20          30        40         50         
GAGAUGUUGGUGCCAGCACCAUCC--     GU        U  A-|  G    CGUGCGC 
                          AGGGU  GUGACUGG UG  CCA AGGG       \
                          UCCCA  CACUGAUC AC  GGU UCCC       U
CAGAAGGACCCCACCCCAACUACGAC     AC        C  CG^  G    ACUUGUG 
.       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

He	Ki	Te	To	Wh

Mature sequence

Ocu-Mir-134_5p

mirBase accession

MIMAT0048225

Sequence

0- UGUGACUGGUUGACCAGAGGGC -22

Get sequence

Star sequence

Ocu-Mir-134_3p*

mirBase accession

MIMAT0048226

Sequence

39- UGUGGGCCACCUAGUCACCAA -60

Get sequence