Mir-154-P3-v2

MirGeneDB ID

Ocu-Mir-154-P3-v2

Family name

MIR-154 (all species)

Seed

UAUGUGG

Species

Rabbit (Oryctolagus cuniculus)

MiRBase ID

ocu-mir-299

Paralogues

Ocu-Mir-154-P1 Ocu-Mir-154-P2-v1 Ocu-Mir-154-P2-v2 Ocu-Mir-154-P3-v1 Ocu-Mir-154-P5 Ocu-Mir-154-P6a-v1 Ocu-Mir-154-P6a-v2 Ocu-Mir-154-P7 Ocu-Mir-154-P8-o1 Ocu-Mir-154-P11 Ocu-Mir-154-P12 Ocu-Mir-154-P14 Ocu-Mir-154-P17 Ocu-Mir-154-P18 Ocu-Mir-154-P19 Ocu-Mir-154-P20 Ocu-Mir-154-P21 Ocu-Mir-154-P23 Ocu-Mir-154-P24 Ocu-Mir-154-P25 Ocu-Mir-154-P26 Ocu-Mir-154-P28-v1 Ocu-Mir-154-P28-v2 Ocu-Mir-154-P29 Ocu-Mir-154-P30 Ocu-Mir-154-P32 Ocu-Mir-154-P33 Ocu-Mir-154-P34

Orthologues

Bta-Mir-154-P3-v1 Bta-Mir-154-P3-v2 Cfa-Mir-154-P3-v1 Cfa-Mir-154-P3-v2 Cja-Mir-154-P3 Cpo-Mir-154-P3-v1 Cpo-Mir-154-P3-v2 Dno-Mir-154-P3-v1 Dno-Mir-154-P3-v2 Eca-Mir-154-P3-v1 Eca-Mir-154-P3-v2 Ete-Mir-154-P3-v1 Ete-Mir-154-P3-v2 Hsa-Mir-154-P3-v1 Hsa-Mir-154-P3-v2 Laf-Mir-154-P3 Mml-Mir-154-P3-v1 Mml-Mir-154-P3-v2 Mmr-Mir-154-P3-v1 Mmr-Mir-154-P3-v2 Mmu-Mir-154-P3-v1 Mmu-Mir-154-P3-v2 Pab-Mir-154-P3-v1 Pab-Mir-154-P3-v2 Rno-Mir-154-P3-v1 Rno-Mir-154-P3-v2

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(oryCun2_add)

chrUn0352: 123315-123367 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-154-P3-v2)

Mir-154-P1 chrUn0352: 121687-121745 [+] UCSC Ensembl
Mir-154-P2-v2 chrUn0352: 122886-122943 [+] UCSC Ensembl
Mir-154-P2-v1 chrUn0352: 122887-122942 [+] UCSC Ensembl
Mir-154-P3-v1 chrUn0352: 123314-123368 [+] UCSC Ensembl
Mir-154-P3-v2 chrUn0352: 123315-123367 [+] UCSC Ensembl
Mir-154-P5 chrUn0352: 124893-124948 [+] UCSC Ensembl
Mir-154-P6a-v1 chrUn0352: 125054-125109 [+] UCSC Ensembl
Mir-154-P6a-v2 chrUn0352: 125054-125109 [+] UCSC Ensembl
Mir-154-P7 chrUn0352: 125317-125376 [+] UCSC Ensembl
Mir-154-P8-o1 chrUn0352: 126028-126087 [+] UCSC Ensembl
Mir-154-P12 chrUn0352: 130083-130140 [+] UCSC Ensembl
Mir-376-P2 chrUn0352: 132903-132959 [+] UCSC Ensembl
Mir-376-P3 chrUn0352: 133217-133274 [+] UCSC Ensembl
Mir-154-P14 chrUn0352: 133369-133421 [+] UCSC Ensembl
Mir-376-P4 chrUn0352: 133511-133568 [+] UCSC Ensembl
Mir-376-P5 chrUn0352: 133845-133902 [+] UCSC Ensembl
Mir-154-P17 chrUn0352: 136582-136644 [+] UCSC Ensembl
Mir-154-P18 chrUn0352: 137030-137087 [+] UCSC Ensembl
Mir-154-P19 chrUn0352: 137513-137576 [+] UCSC Ensembl
Mir-154-P20 chrUn0352: 138028-138086 [+] UCSC Ensembl
Mir-154-P21 chrUn0352: 139340-139398 [+] UCSC Ensembl
Mir-154-P23 chrUn0352: 141248-141305 [+] UCSC Ensembl
Mir-154-P24 chrUn0352: 142718-142775 [+] UCSC Ensembl
Mir-134 chrUn0352: 143048-143107 [+] UCSC Ensembl
Mir-154-P25 chrUn0352: 143743-143801 [+] UCSC Ensembl
Mir-154-P26 chrUn0352: 147896-147953 [+] UCSC Ensembl
Mir-154-P28-v2 chrUn0352: 149011-149066 [+] UCSC Ensembl
Mir-154-P28-v1 chrUn0352: 149012-149065 [+] UCSC Ensembl
Mir-154-P29 chrUn0352: 150228-150287 [+] UCSC Ensembl
Mir-541 chrUn0352: 152092-152157 [+] UCSC Ensembl
Mir-154-P32 chrUn0352: 152953-153008 [+] UCSC Ensembl
Mir-154-P33 chrUn0352: 153189-153244 [+] UCSC Ensembl
Mir-154-P34 chrUn0352: 153728-153783 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUCGCUGCCACGGUGCGGUACUUGAAGGAAUGGUUUACCGUCCCACAUACAUUUUGAGUAUGUAUGUGGGACGGUAAACCGCUUCUUGGUAUCCAGCCCAGCCAUCCGAAGCG

Get precursor sequence

Structure

        10            20        30        40        50      
GUCGCUGCCACGGUGCG----|    UG     A                      UUU 
                     GUACU  AAGGA UGGUUUACCGUCCCACAUACAU   \
                     UAUGG  UUCUU GCCAAAUGGCAGGGUGUAUGUA   G
GCGAAGCCUACCGACCCGACC^    --     C                      UGA 
 110       100        90          80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

He	Ki	Te	To	Wh

Star sequence

Ocu-Mir-154-P3-v2_5p*

mirBase accession

MIMAT0048362

Sequence

0- UGGUUUACCGUCCCACAUACAU -22

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Mature sequence

Ocu-Mir-154-P3-v2_3p

mirBase accession

MIMAT0048363

Sequence

31- GUAUGUGGGACGGUAAACCGCU -53

Get sequence