Mir-154-P3

MirGeneDB ID

Cja-Mir-154-P3

Family name

MIR-154 (all species)

Seed

AUGUGGG

Species

White-tufted-ear marmoset (Callithrix jacchus)

MiRBase ID

Paralogues

Cja-Mir-154-P1 Cja-Mir-154-P2 Cja-Mir-154-P4 Cja-Mir-154-P5 Cja-Mir-154-P6a Cja-Mir-154-P6b Cja-Mir-154-P7 Cja-Mir-154-P8a Cja-Mir-154-P9 Cja-Mir-154-P10 Cja-Mir-154-P11 Cja-Mir-154-P12 Cja-Mir-154-P14 Cja-Mir-154-P16a Cja-Mir-154-P16b Cja-Mir-154-P17 Cja-Mir-154-P18 Cja-Mir-154-P19 Cja-Mir-154-P20 Cja-Mir-154-P21 Cja-Mir-154-P22 Cja-Mir-154-P23 Cja-Mir-154-P24 Cja-Mir-154-P25 Cja-Mir-154-P26 Cja-Mir-154-P28 Cja-Mir-154-P29 Cja-Mir-154-P30 Cja-Mir-154-P31 Cja-Mir-154-P32 Cja-Mir-154-P33 Cja-Mir-154-P34

Orthologues

Bta-Mir-154-P3-v1 Bta-Mir-154-P3-v2 Cfa-Mir-154-P3-v1 Cfa-Mir-154-P3-v2 Cpo-Mir-154-P3-v1 Cpo-Mir-154-P3-v2 Dno-Mir-154-P3-v1 Dno-Mir-154-P3-v2 Eca-Mir-154-P3-v1 Eca-Mir-154-P3-v2 Ete-Mir-154-P3-v1 Ete-Mir-154-P3-v2 Hsa-Mir-154-P3-v1 Hsa-Mir-154-P3-v2 Laf-Mir-154-P3 Mml-Mir-154-P3-v1 Mml-Mir-154-P3-v2 Mmr-Mir-154-P3-v1 Mmr-Mir-154-P3-v2 Mmu-Mir-154-P3-v1 Mmu-Mir-154-P3-v2 Ocu-Mir-154-P3-v1 Ocu-Mir-154-P3-v2 Pab-Mir-154-P3-v1 Pab-Mir-154-P3-v2 Rno-Mir-154-P3-v1 Rno-Mir-154-P3-v2

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)

CM021924.1: 131836643-131836697 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CAUGACCACCUCCGUGCGGUACUUGAAGAAAUGGUUUACCGUCCCACAUACAUUUUGCAUAUGUAUGUGGGACGGUAAACCGCUUCUUGGUAUCCAGCCCAGCCAUCCAGACCUC

Get precursor sequence

Structure

        10            20        30        40        50       
CAUGACCACCUCCGUGC----|     UG     A                     UUUU 
                     GGUACU  AAGAA UGGUUUACCGUCCCACAUACA    \
                     CUAUGG  UUCUU GCCAAAUGGCAGGGUGUAUGU    G
CUCCAGACCUACCGACCCGAC^     --     C                     AUAC 
   110       100        90          80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

Tissue expression

To

Star sequence

Cja-Mir-154-P3_5p* (predicted)

mirBase accession

None

Sequence

0- AUGGUUUACCGUCCCACAUACA -22

Get sequence

Mature sequence

Cja-Mir-154-P3_3p

mirBase accession

None

Sequence

33- UAUGUGGGACGGUAAACCGCUU -55

Get sequence