MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-154-P5

Family name MIR-154 (all species)
Seed AGGACAC
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-154-P1  Cja-Mir-154-P2  Cja-Mir-154-P3  Cja-Mir-154-P4  Cja-Mir-154-P6a  Cja-Mir-154-P6b  Cja-Mir-154-P7  Cja-Mir-154-P8a  Cja-Mir-154-P9  Cja-Mir-154-P10  Cja-Mir-154-P11  Cja-Mir-154-P12  Cja-Mir-154-P14  Cja-Mir-154-P16a  Cja-Mir-154-P16b  Cja-Mir-154-P17  Cja-Mir-154-P18  Cja-Mir-154-P19  Cja-Mir-154-P20  Cja-Mir-154-P21  Cja-Mir-154-P22  Cja-Mir-154-P23  Cja-Mir-154-P24  Cja-Mir-154-P25  Cja-Mir-154-P26  Cja-Mir-154-P28  Cja-Mir-154-P29  Cja-Mir-154-P30  Cja-Mir-154-P31  Cja-Mir-154-P32  Cja-Mir-154-P33  Cja-Mir-154-P34 
Orthologues Bta-Mir-154-P5  Cfa-Mir-154-P5  Cpo-Mir-154-P5  Dno-Mir-154-P5  Eca-Mir-154-P5  Ete-Mir-154-P5  Hsa-Mir-154-P5  Laf-Mir-154-P5  Mml-Mir-154-P5  Mmr-Mir-154-P5  Mmu-Mir-154-P5  Ocu-Mir-154-P5  Pab-Mir-154-P5 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021924.1: 131838404-131838459 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUCAGCAUCACUUCCUGGUAUUUGAAGAUGCGGUUGACCAUGGUGUGUACGCUUUAUUUAUGACGUAGGACACAUGGUCUACUUCUUCUCAAUAUCACAUCUCGCCUCGGAAGACU
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Structure
        10            20         30        40         50       
GUCAGCAUCACUUCCUG----     U-|    UGC   U       G   G-    CUUUA 
                     GUAUU  GAAGA   GGU GACCAUG UGU  UACG     U
                     UAUAA  CUUCU   UCA CUGGUAC ACA  AUGC     U
UCAGAAGGCUCCGCUCUACAC     CU^    ---   U       -   GG    AGUAU 
    110       100        90           80         70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Cja-Mir-154-P5_5p* (predicted)
mirBase accessionNone
Sequence 
0- CGGUUGACCAUGGUGUGUACG -21
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Mature sequence

Cja-Mir-154-P5_3p (predicted)
mirBase accessionNone
Sequence 
35- UAGGACACAUGGUCUACUUCU -56
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