| MirGeneDB ID | Cja-Mir-154-P5 |
|---|---|
| Family name | MIR-154 (all species) |
| Seed | AGGACAC |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | Cja-Mir-154-P1 Cja-Mir-154-P2 Cja-Mir-154-P3 Cja-Mir-154-P4 Cja-Mir-154-P6a Cja-Mir-154-P6b Cja-Mir-154-P7 Cja-Mir-154-P8a Cja-Mir-154-P9 Cja-Mir-154-P10 Cja-Mir-154-P11 Cja-Mir-154-P12 Cja-Mir-154-P14 Cja-Mir-154-P16a Cja-Mir-154-P16b Cja-Mir-154-P17 Cja-Mir-154-P18 Cja-Mir-154-P19 Cja-Mir-154-P20 Cja-Mir-154-P21 Cja-Mir-154-P22 Cja-Mir-154-P23 Cja-Mir-154-P24 Cja-Mir-154-P25 Cja-Mir-154-P26 Cja-Mir-154-P28 Cja-Mir-154-P29 Cja-Mir-154-P30 Cja-Mir-154-P31 Cja-Mir-154-P32 Cja-Mir-154-P33 Cja-Mir-154-P34 |
| Orthologues | Bta-Mir-154-P5 Cfa-Mir-154-P5 Cpo-Mir-154-P5 Dno-Mir-154-P5 Eca-Mir-154-P5 Ete-Mir-154-P5 Hsa-Mir-154-P5 Laf-Mir-154-P5 Mml-Mir-154-P5 Mmr-Mir-154-P5 Mmu-Mir-154-P5 Ocu-Mir-154-P5 Pab-Mir-154-P5 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021924.1: 131838404-131838459 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GUCAGCAUCACUUCCUGGUAUUUGAAGAUGCGGUUGACCAUGGUGUGUACGCUUUAUUUAUGACGUAGGACACAUGGUCUACUUCUUCUCAAUAUCACAUCUCGCCUCGGAAGACUGet precursor sequence |
| Structure | 10 20 30 40 50 GUCAGCAUCACUUCCUG---- U-| UGC U G G- CUUUA GUAUU GAAGA GGU GACCAUG UGU UACG U UAUAA CUUCU UCA CUGGUAC ACA AUGC U UCAGAAGGCUCCGCUCUACAC CU^ --- U - GG AGUAU 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Cja-Mir-154-P5_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- CGGUUGACCAUGGUGUGUACG -21
Get sequence
|
| Mature sequence | Cja-Mir-154-P5_3p (predicted) |
| mirBase accession | None |
| Sequence |
35- UAGGACACAUGGUCUACUUCU -56
Get sequence
|
