MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-154-P30

Family name MIR-154 (all species)
Seed AAUGUUG
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-154-P1  Cja-Mir-154-P2  Cja-Mir-154-P3  Cja-Mir-154-P4  Cja-Mir-154-P5  Cja-Mir-154-P6a  Cja-Mir-154-P6b  Cja-Mir-154-P7  Cja-Mir-154-P8a  Cja-Mir-154-P9  Cja-Mir-154-P10  Cja-Mir-154-P11  Cja-Mir-154-P12  Cja-Mir-154-P14  Cja-Mir-154-P16a  Cja-Mir-154-P16b  Cja-Mir-154-P17  Cja-Mir-154-P18  Cja-Mir-154-P19  Cja-Mir-154-P20  Cja-Mir-154-P21  Cja-Mir-154-P22  Cja-Mir-154-P23  Cja-Mir-154-P24  Cja-Mir-154-P25  Cja-Mir-154-P26  Cja-Mir-154-P28  Cja-Mir-154-P29  Cja-Mir-154-P31  Cja-Mir-154-P32  Cja-Mir-154-P33  Cja-Mir-154-P34 
Orthologues Bta-Mir-154-P30  Cfa-Mir-154-P30  Cpo-Mir-154-P30  Dno-Mir-154-P30  Eca-Mir-154-P30  Ete-Mir-154-P30  Hsa-Mir-154-P30  Laf-Mir-154-P30  Mml-Mir-154-P30  Mmr-Mir-154-P30  Mmu-Mir-154-P30  Ocu-Mir-154-P30  Pab-Mir-154-P30  Rno-Mir-154-P30 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021924.1: 131880204-131880257 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAUCUGAGCCUCUCCAUGGUACUUGGGGAGAGGUUACCCGAGCAACUUUGCAUCUAGACGACGAAUGUUGCUCGGUGAACCCCUUUUCGGUAUCAAAUUCCACCAGGGAGGCCG
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Structure
        10           20        30        40         50      
CAUCUGAGCCUCUCCAU---|     U GG   A    AC         -    CAUCU 
                    GGUACU G  GAG GGUU  CCGAGCAAC UUUG     \
                    CUAUGG C  UUC CCAA  GGCUCGUUG AAGC     A
GCCGGAGGGACCACCUUAAA^     - UU   C    GU         U    AGCAG 
  110       100        90         80        70        60
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Cja-Mir-154-P30_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGGUUACCCGAGCAACUUUGCAU -23
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Mature sequence

Cja-Mir-154-P30_3p
mirBase accessionNone
Sequence 
32- GAAUGUUGCUCGGUGAACCCCU -54
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