MirGeneDB 3.0

MirGeneDB ID

Mmr-Mir-154-P30

Family name MIR-154 (all species)
Seed AAUGUUG
Species Gray mouse lemur (Microcebus murinus)
MiRBase ID mmr-mir-409
Paralogues Mmr-Mir-154-P1  Mmr-Mir-154-P2-v1  Mmr-Mir-154-P2-v2  Mmr-Mir-154-P3-v1  Mmr-Mir-154-P3-v2  Mmr-Mir-154-P5  Mmr-Mir-154-P6a-v1  Mmr-Mir-154-P6a-v2  Mmr-Mir-154-P6b  Mmr-Mir-154-P6c  Mmr-Mir-154-P7  Mmr-Mir-154-P8a  Mmr-Mir-154-P8b  Mmr-Mir-154-P9  Mmr-Mir-154-P10  Mmr-Mir-154-P11  Mmr-Mir-154-P12  Mmr-Mir-154-P14  Mmr-Mir-154-P16  Mmr-Mir-154-P17  Mmr-Mir-154-P18  Mmr-Mir-154-P20  Mmr-Mir-154-P21  Mmr-Mir-154-P22  Mmr-Mir-154-P23  Mmr-Mir-154-P24  Mmr-Mir-154-P25  Mmr-Mir-154-P26  Mmr-Mir-154-P28  Mmr-Mir-154-P29  Mmr-Mir-154-P31  Mmr-Mir-154-P32  Mmr-Mir-154-P33  Mmr-Mir-154-P34  Mmr-Mir-154-P37 
Orthologues Bta-Mir-154-P30  Cfa-Mir-154-P30  Cja-Mir-154-P30  Cpo-Mir-154-P30  Dno-Mir-154-P30  Eca-Mir-154-P30  Ete-Mir-154-P30  Hsa-Mir-154-P30  Laf-Mir-154-P30  Mml-Mir-154-P30  Mmu-Mir-154-P30  Ocu-Mir-154-P30  Pab-Mir-154-P30  Rno-Mir-154-P30 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_000165445.3_Mmur_3.0_genomic)
CM007663.1: 12759249-12759302 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-154-P30)
Mir-154-P2-v2 CM007663.1: 12719569-12719626 [+] UCSC Ensembl
Mir-154-P2-v1 CM007663.1: 12719570-12719625 [+] UCSC Ensembl
Mir-154-P37 CM007663.1: 12721366-12721423 [+] UCSC Ensembl
Mir-154-P17 CM007663.1: 12739835-12739897 [+] UCSC Ensembl
Mir-154-P22 CM007663.1: 12745610-12745663 [+] UCSC Ensembl
Mir-154-P30 CM007663.1: 12759249-12759302 [+] UCSC Ensembl
Mir-154-P33 CM007663.1: 12759838-12759893 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGUCCGCGCCUCUCCAUGGUACUCGGGGAGAGGUUACCCGAGCAACUUUGCAUCUGGACGACGAAUGUUGCUCGGUGAACCCCUCUUCGGUAUCAAAUUCCACCAGGGAGGCGU
Get precursor sequence
Structure
        10           20        30        40         50       
AGUCCGCGCCUCUCCAU---|    U       A    AC         -    CA  UG 
                    GGUAC CGGGGAG GGUU  CCGAGCAAC UUUG  UC  \
                    CUAUG GCUUCUC CCAA  GGCUCGUUG AAGC  AG  G
UGCGGAGGGACCACCUUAAA^    -       C    GU         U    --  CA 
  110       100        90         80        70          60
Deep sequencing
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CommentThis gene was classified as a non-canonical miRNA in Fromm et al. (2015) given that the Dicer cut is consistently +4. However, the Drosha cut is +2 and reads are abrogated with the Drosha knock-out and hence it is accepted here.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Mu Mu Mu Mu Mu Mu Mu Mu
Star sequence

Mmr-Mir-154-P30_5p*

mirBase accessionNone
Sequence
0- AGGUUACCCGAGCAACUUUGCAUC -24
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Mature sequence

Mmr-Mir-154-P30_3p

mirBase accessionMIMAT0049190
Sequence
32- GAAUGUUGCUCGGUGAACCCCU -54
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