| MirGeneDB ID | Pab-Mir-154-P30 |
|---|---|
| Family name | MIR-154 (all species) |
| Seed | AAUGUUG |
| Species | Sumatran orangutan (Pongo abelii) |
| MiRBase ID | |
| Paralogues | Pab-Mir-154-P1 Pab-Mir-154-P2-v1 Pab-Mir-154-P2-v2 Pab-Mir-154-P3-v1 Pab-Mir-154-P3-v2 Pab-Mir-154-P4 Pab-Mir-154-P5 Pab-Mir-154-P6a-v1 Pab-Mir-154-P6a-v2 Pab-Mir-154-P6b Pab-Mir-154-P7 Pab-Mir-154-P8a Pab-Mir-154-P8b Pab-Mir-154-P9 Pab-Mir-154-P10 Pab-Mir-154-P11 Pab-Mir-154-P12 Pab-Mir-154-P14 Pab-Mir-154-P16a Pab-Mir-154-P16b Pab-Mir-154-P17 Pab-Mir-154-P18 Pab-Mir-154-P19 Pab-Mir-154-P20 Pab-Mir-154-P21 Pab-Mir-154-P23 Pab-Mir-154-P24 Pab-Mir-154-P25 Pab-Mir-154-P26 Pab-Mir-154-P28 Pab-Mir-154-P29 Pab-Mir-154-P31 Pab-Mir-154-P32 Pab-Mir-154-P33 Pab-Mir-154-P34 |
| Orthologues | Bta-Mir-154-P30 Cfa-Mir-154-P30 Cja-Mir-154-P30 Cpo-Mir-154-P30 Dno-Mir-154-P30 Eca-Mir-154-P30 Ete-Mir-154-P30 Hsa-Mir-154-P30 Laf-Mir-154-P30 Mml-Mir-154-P30 Mmr-Mir-154-P30 Mmu-Mir-154-P30 Ocu-Mir-154-P30 Rno-Mir-154-P30 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054694.2: 105497334-105497387 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CAUCUGAGCCUCUCCAUGGUACUCGGGGAGAGGUUACCCGAGCAACUUUGCAUCUGGACGACGAAUGUUGCUCGGUGAACCCCUUUUCGGUAUCAAAUUCCACCAGGGAGGCCGGet precursor sequence |
| Structure | 10 20 30 40 50 CAUCUGAGCCUCUCCAU---| U GG A AC - CAUCU GGUAC CG GAG GGUU CCGAGCAAC UUUG \ CUAUG GC UUC CCAA GGCUCGUUG AAGC G GCCGGAGGGACCACCUUAAA^ - UU C GU U AGCAG 110 100 90 80 70 60 |
| Deep sequencing | |
| Comment | This gene was classified as a non-canonical miRNA in Fromm et al. (2015) given that the Dicer cut is consistently +4. However, the Drosha cut is +2 and reads are abrogated with the Drosha knock-out and hence it is accepted here. |
| 3' NTU | No |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Star sequence | Pab-Mir-154-P30_5p* |
| mirBase accession | None |
| Sequence |
0- AGGUUACCCGAGCAACUUUGCAU -23
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|
| Mature sequence | Pab-Mir-154-P30_3p |
| mirBase accession | None |
| Sequence |
32- GAAUGUUGCUCGGUGAACCCCU -54
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|
