Mir-154-P17

MirGeneDB ID

Pab-Mir-154-P17

Family name

MIR-154 (all species)

Seed

AUACAAG

Species

Sumatran orangutan (Pongo abelii)

MiRBase ID

Paralogues

Pab-Mir-154-P1 Pab-Mir-154-P2-v1 Pab-Mir-154-P2-v2 Pab-Mir-154-P3-v1 Pab-Mir-154-P3-v2 Pab-Mir-154-P4 Pab-Mir-154-P5 Pab-Mir-154-P6a-v1 Pab-Mir-154-P6a-v2 Pab-Mir-154-P6b Pab-Mir-154-P7 Pab-Mir-154-P8a Pab-Mir-154-P8b Pab-Mir-154-P9 Pab-Mir-154-P10 Pab-Mir-154-P11 Pab-Mir-154-P12 Pab-Mir-154-P14 Pab-Mir-154-P16a Pab-Mir-154-P16b Pab-Mir-154-P18 Pab-Mir-154-P19 Pab-Mir-154-P20 Pab-Mir-154-P21 Pab-Mir-154-P23 Pab-Mir-154-P24 Pab-Mir-154-P25 Pab-Mir-154-P26 Pab-Mir-154-P28 Pab-Mir-154-P29 Pab-Mir-154-P30 Pab-Mir-154-P31 Pab-Mir-154-P32 Pab-Mir-154-P33 Pab-Mir-154-P34

Orthologues

Bta-Mir-154-P17 Cfa-Mir-154-P17 Cja-Mir-154-P17 Cpo-Mir-154-P17 Dno-Mir-154-P17 Eca-Mir-154-P17 Ete-Mir-154-P17 Hsa-Mir-154-P17 Laf-Mir-154-P17 Mml-Mir-154-P17 Mmr-Mir-154-P17 Mmu-Mir-154-P17 Ocu-Mir-154-P17 Rno-Mir-154-P17

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)

CM054694.2: 105477924-105477986 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACCCGCCCAGUGCUAUUGUUUGGUACUUAAAGCGAGGUUGCCCUUUGUAUAUUCGGUUUAUUGACAUGGAAUAUACAAGGGCAAGCUCUCUGUGAGUAUCAAACCUUGUCUUGGACCCAGUCC

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Structure

        10          20        30        40        50        60 
ACCCGCCCAGUGCUAUU--|           A  C   G        U       CGGUUUA 
                   GUUUGGUACUUA AG GAG UUGCCCUU GUAUAUU       U
                   CAAACUAUGAGU UC CUC AACGGGAA CAUAUAA       U
CCUGACCCAGGUUCUGUUC^           G  U   G        -       GGUACAG 
 120       110       100        90        80         70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Br	Br	Li	Li

Star sequence

Pab-Mir-154-P17_5p*

mirBase accession

None

Sequence

0- AGCGAGGUUGCCCUUUGUAUAUU -23

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Mature sequence

Pab-Mir-154-P17_3p

mirBase accession

None

Sequence

41- UAUACAAGGGCAAGCUCUCUGU -63

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